TkA02G328760 | RubberDandelionOmics

Gene overview

TkA02G328760

Reference: TK1151 Chr: Chr02 Coordinates: 83435498-83440772 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3797 bp · TkA02G328760|TK1151|cDNA

CTAAAAAAAGAGTTTATAAAGCTCAAGGACTACAATTGAAAGTTTGTCAAACTGTCATGGACCAGTTTGGTAGAACCGTAGAAGAGGGTTTGATTCCCTTTTCTTTTCACCGCAACCGATCTAAAACTGAAGTGAAAAACCACACACTCTACTGTCAACCTCCCCTCCGCGCTGCTTCGGCTTGTACTCTCGCCATCATCCGCCTCTCTTCCCGGCGACAACAACAATGGAGCCAGATGTCAGCATCGCCACTAGTTCCA...

CDS

Download CDS FASTA

1647 bp · TkA02G328760|TK1151|CDS

ATGGGTTTCTCTCGACCAGAATCTGGCGGAATAATTCTCAAGACACCTCTAGATTCTCAAGCCAGTCTCAGCTCAGAGGAGGTTTATGTTTTAGGTGATCAAAGCAACAAAGAGGAGACTTGGCGAGCACAGAAAACAACTGGAGATTATTGTTTGCTAGCTGGATCACCTGTTGATGCCAATGCCCATTATTCTACTGCTTTAGAACTTGCCAGGCTGACTGGTGATCACTTTTGGTATGCTGGCGCAATGGAAGGTGG...

Protein

Download Protein FASTA

548 aa · TkA02G328760|TK1151|PROTEIN

MGFSRPESGGIILKTPLDSQASLSSEEVYVLGDQSNKEETWRAQKTTGDYCLLAGSPVDANAHYSTALELARLTGDHFWYAGAMEGGVCALLMDKAVQKDPVIEEEVKYRYNSVIVHYRKSFIQDNAQRVSPLSFELEATLKLARFLCRRELAKEVVDLLTAAADGAKSLIDASDRLILYIEIARLYGTLGYHRKAAFFSRQVAQLYLQQETTFSAISAMQVLALTTKAYRVQTKASIPDQPISTDGEGGKVNHNSVVSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G328760`
TK1151 ID	TkA02G328760
OH-1004 ID	LXL04_015466
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.100
Protein coverage (%)	TK1151 98.723 / OH-1004 47.989 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G328760

Location Chr02:83435498-83440772 (-)

Description Similar to TRS120: Trafficking protein particle complex II-specific subunit 120 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11040`	Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells.	Tethering factors required for cytokinesis in Arabidopsis.2010 · DOI: 10.1104/pp.110.154286 A specific role for Arabidopsis TRAPPII in post-Golgi trafficking that is crucial for cytokinesis and cell polarity.2011 · DOI: 10.1111/j.1365-313x.2011.04681.x VAN4 encodes a putative TRS120 that is required for normal cell growth and vein development in Arabidopsis.2014 · DOI: 10.1093/pcp/pcu012

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0502200`	Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015466 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0000919 cell plate assembly Biological Process

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0006901 vesicle coating Biological Process

GO:0030154 cell differentiation Biological Process

GO:0099022 vesicle tethering Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005769 early endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT5G11040

bta:533451

dosa:Os04g0502200

hsa:83696

mmu:76510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.541

Rank 1 · TkA02G328760 · TK1151

Nucleus0.282

Rank 2 · TkA02G328760 · TK1151

Golgi apparatus0.190

Rank 3 · TkA02G328760 · TK1151

Endoplasmic reticulum0.084

Rank 4 · TkA02G328760 · TK1151

Lysosome / Vacuole0.078

Rank 5 · TkA02G328760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08626TRAPPC9-Trs12034-95 aa

PF13424TPR_1249-77 aa

PF13424TPR_12139-207 aa

PF26251TPR_TRAPPC9-Trs120155-318 aa

PF26254Ig_TRAPPC9-Trs120_1st365-467 aa

PF24545Ig_TPPC8_1st384-416 aa

PF24545Ig_TPPC8_1st429-457 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G328760	`PF08626`	TRAPPC9-Trs120	34	95	1.5e-08	34.9
TkA02G328760	`PF13424`	TPR_12	49	77	0.017	16.0
TkA02G328760	`PF13424`	TPR_12	139	207	0.017	16.0
TkA02G328760	`PF26251`	TPR_TRAPPC9-Trs120	155	318	1.8e-13	51.2
TkA02G328760	`PF26254`	Ig_TRAPPC9-Trs120_1st	365	467	5.4e-23	82.5
TkA02G328760	`PF24545`	Ig_TPPC8_1st	384	416	0.0018	18.6
TkA02G328760	`PF24545`	Ig_TPPC8_1st	429	457	0.0018	18.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FY61`	Arabidopsis thaliana	sp\|Q9FY61\|TR120_ARATH Trafficking protein particle complex II-specific subunit 120 homolog	72.400%	Swiss-Prot	High
`Q0JBY9`	Oryza sativa subsp. japonica	sp\|Q0JBY9\|TR120_ORYSJ Trafficking protein particle complex II-specific subunit 120 homolog	67.200%	Swiss-Prot	High

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