TkA02G318680 | RubberDandelionOmics

Gene overview

TkA02G318680

Reference: TK1151 Chr: Chr02 Coordinates: 80951463-80953409 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

627 bp · TkA02G318680|TK1151|cDNA

ATGAGGAAACAGGTCCAAAAACCAGTAGCTCTCAATCTTGATAAATGGTTAGAGTTTAAGCAGCAAGAGAAGGCTAAAGTCAGTCACAATACCCAGCTATACAGGTTTTCTTTTGATCCAAATCTTGAATTGGGACTCGGTGTTGCATCATGCCTTATCACCAGGGCTCCATTGGGTGAAGATGCTGAAGGAAAAACAAAATATGTTGTTCGACCGTATACCCCAATATCAGATCCAAATTCTAAAGGTTACTTTGATTT...

CDS

Download CDS FASTA

627 bp · TkA02G318680|TK1151|CDS

ATGAGGAAACAGGTCCAAAAACCAGTAGCTCTCAATCTTGATAAATGGTTAGAGTTTAAGCAGCAAGAGAAGGCTAAAGTCAGTCACAATACCCAGCTATACAGGTTTTCTTTTGATCCAAATCTTGAATTGGGACTCGGTGTTGCATCATGCCTTATCACCAGGGCTCCATTGGGTGAAGATGCTGAAGGAAAAACAAAATATGTTGTTCGACCGTATACCCCAATATCAGATCCAAATTCTAAAGGTTACTTTGATTT...

Protein

Download Protein FASTA

208 aa · TkA02G318680|TK1151|PROTEIN

MRKQVQKPVALNLDKWLEFKQQEKAKVSHNTQLYRFSFDPNLELGLGVASCLITRAPLGEDAEGKTKYVVRPYTPISDPNSKGYFDLMIKIYPEGKMSQYFSKLKSRDVVEVKGKTIWDIFNLVGCLLEPATVFPSVVAHGCFALLTLLEIRETHRLSIDRRTGAWMRWPEWSPIQVLDEEAQAAKRAREEQLRARIRDLTKEESEEQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G318680`
TK1151 ID	TkA02G318680
OH-1004 ID	LXL04_018272
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	61.200
Protein coverage (%)	TK1151 50.481 / OH-1004 37.640 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G318680

Location Chr02:80951463-80953409 (-)

Description Similar to CBR2: NADH-cytochrome b5 reductase-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20080`	Desaturation and elongation of fatty acids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018272 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006696 ergosterol biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009536 plastid Cellular Component

GO:0004128 cytochrome-b5 reductase activity, acting on NAD(P)H Molecular Function

GO:0005507 copper ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0090524 cytochrome-b5 reductase activity, acting on NADH Molecular Function

KEGG gene cross-reference

act:ACLA_030130

ath:AT5G20080

ddi:DDB_G0285399

mgr:MGG_03708

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.421

Rank 1 · TkA02G318680 · TK1151

Cytoplasm0.196

Rank 2 · TkA02G318680 · TK1151

Endoplasmic reticulum0.184

Rank 3 · TkA02G318680 · TK1151

Peroxisome0.138

Rank 4 · TkA02G318680 · TK1151

Nucleus0.094

Rank 5 · TkA02G318680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00970FAD_binding_622-114 aa

PF31128Imm35_like156-177 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G318680	`PF00970`	FAD_binding_6	22	114	1e-21	77.9
TkA02G318680	`PF31128`	Imm35_like	156	177	0.028	15.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P83291`	Arabidopsis thaliana	sp\|P83291\|NB5R2_ARATH NADH-cytochrome b5 reductase-like protein	77.100%	Swiss-Prot	Medium

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