TkA02G318550 | RubberDandelionOmics

Gene overview

TkA02G318550

Reference: TK1151 Chr: Chr02 Coordinates: 80918383-80921712 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1580 bp · TkA02G318550|TK1151|cDNA

TTTGCACTTCACCCGTTAGACCACCAGTCCACCACTCAGCCGGTGACTACGCCCATATACTTCAAAACCCTAAGTCCTGGCTGCTCTCTATAACAAGCACAGCGTATCTATTGGGCAACAATTTTTACGCTAATGACTTCTCTTGCTTTTTCTTCAGCGAATCTCGGAGCTACGAACAAATTTCGCTCTGCAATCCCTGCTAGAAACAGTGTAATTAGTTGCAGGGTCAATTTCAAGGAAAACGGGAGACTGATTACACA...

CDS

Download CDS FASTA

1170 bp · TkA02G318550|TK1151|CDS

ATGACTTCTCTTGCTTTTTCTTCAGCGAATCTCGGAGCTACGAACAAATTTCGCTCTGCAATCCCTGCTAGAAACAGTGTAATTAGTTGCAGGGTCAATTTCAAGGAAAACGGGAGACTGATTACACAAACCCTCACCAGTGACCAAGAAACATTGCCTAATTTCTTGACATCAAATCAGTTTGAGAGAATTCCAGCAAAAAAAGATGACAACAGACTTCGGATTTTTTCAGGCACTGCCAACCCTTTACTATCTGAGGA...

Protein

Download Protein FASTA

389 aa · TkA02G318550|TK1151|PROTEIN

MTSLAFSSANLGATNKFRSAIPARNSVISCRVNFKENGRLITQTLTSDQETLPNFLTSNQFERIPAKKDDNRLRIFSGTANPLLSEEVACYMGLELGKIDIKRFADGEIYVQLRESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKTITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVHGQPVILDYLASKTIKTDDLVVVSPDVGGVARARAFAKKLSDAPLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G318550`
TK1151 ID	TkA02G318550
OH-1004 ID	LXL04_015540
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G318550

Location Chr02:80918383-80921712 (-)

Description Similar to PRS1: Ribose-phosphate pyrophosphokinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44530`	Ribose-phosphate pyrophosphokinase 5, chloroplastic.	No verified direct reference in this release
`At1g32380`	Ribose-phosphate pyrophosphokinase 2, chloroplastic.	No verified direct reference in this release
`At2g35390`	Ribose-phosphate pyrophosphokinase 1, chloroplastic.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0127700`	Ribose-phosphate pyrophosphokinase 1, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015540 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process Biological Process

GO:0006164 purine nucleotide biosynthetic process Biological Process

GO:0009156 ribonucleoside monophosphate biosynthetic process Biological Process

GO:0002189 ribose phosphate diphosphokinase complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004749 ribose phosphate diphosphokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G32380

ath:AT2G35390

ath:AT2G44530

dosa:Os02g0127700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.936

Rank 1 · TkA02G318550 · TK1151

Mitochondrion0.097

Rank 2 · TkA02G318550 · TK1151

Cytoplasm0.046

Rank 3 · TkA02G318550 · TK1151

Peroxisome0.024

Rank 4 · TkA02G318550 · TK1151

Nucleus0.024

Rank 5 · TkA02G318550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13793Pribosyltran_N74-189 aa

PF14681UPRTase92-128 aa

PF00156Pribosyltran226-320 aa

PF14572Pribosyl_synth235-256 aa

PF14681UPRTase261-342 aa

PF14572Pribosyl_synth274-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G318550	`PF13793`	Pribosyltran_N	74	189	9.4e-52	174.5
TkA02G318550	`PF14681`	UPRTase	92	128	0.058	13.6
TkA02G318550	`PF00156`	Pribosyltran	226	320	4.5e-17	62.5
TkA02G318550	`PF14572`	Pribosyl_synth	235	256	3.8e-23	83.1
TkA02G318550	`PF14681`	UPRTase	261	342	0.058	13.6
TkA02G318550	`PF14572`	Pribosyl_synth	274	380	3.8e-23	83.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64888`	Arabidopsis thaliana	sp\|O64888\|KPRS5_ARATH Ribose-phosphate pyrophosphokinase 5, chloroplastic	89.400%	Swiss-Prot	High
`Q42583`	Arabidopsis thaliana	sp\|Q42583\|KPRS2_ARATH Ribose-phosphate pyrophosphokinase 2, chloroplastic	84.200%	Swiss-Prot	High
`Q42581`	Arabidopsis thaliana	sp\|Q42581\|KPRS1_ARATH Ribose-phosphate pyrophosphokinase 1, chloroplastic	77.200%	Swiss-Prot	High
`Q6Z2L5`	Oryza sativa subsp. japonica	sp\|Q6Z2L5\|KPRS1_ORYSJ Ribose-phosphate pyrophosphokinase 1, chloroplastic	87.300%	Swiss-Prot	High

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