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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G308730
Reference: TK1151 Chr: Chr02 Coordinates: 78572507-78575700 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1642 bp · TkA02G308730|TK1151|cDNA

CTCCCCACCCTCCCAATTCAAAACCCTAAAACCATTCCCAAACTTCTCGCTGCATATCTCCCGCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACGGATTACGAATATGGTAGCGATGCAACTCGATGAAGAAACCGTCAAGAAAGTTATTCGACAGGTTGAGTTCTATTTCAGTGATAGTAACCTTCCAAGGGATGATTTTCTTAAGAAGACCATTGCAGAGAGTGAAGATGGAATGGTCAGCCTGGC...

CDS

Download CDS FASTA

1434 bp · TkA02G308730|TK1151|CDS

CTCCCCACCCTCCCAATTCAAAACCCTAAAACCATTCCCAAACTTCTCGCTGCATATCTCCCGCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACGGATTACGAATATGGTAGCGATGCAACTCGATGAAGAAACCGTCAAGAAAGTTATTCGACAGGTTGAGTTCTATTTCAGTGATAGTAACCTTCCAAGGGATGATTTTCTTAAGAAGACCATTGCAGAGAGTGAAGATGGAATGGTCAGCCTGGC...

Protein

Download Protein FASTA

477 aa · TkA02G308730|TK1151|PROTEIN

LPTLPIQNPKTIPKLLAAYLPLPLSLSLSLSLSHTRITNMVAMQLDEETVKKVIRQVEFYFSDSNLPRDDFLKKTIAESEDGMVSLALICSFSRMRGHLSLGDVKVEDVPEDTVAAVAETLKNSTTVKISEDGKKVGRTTELPKVEEAIEQLDSRTIAASPLEYDIKLEDVESFFGQYFKVNSVRLPRHVSDKKLFCGTALIEFSCEEDATKILTEKLVFRGAELELKTKKEFDEKRAEQEEAENTRRTMIQNRKNGSQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G308730
TK1151 IDTkA02G308730
OH-1004 IDLXL04_015629
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)89.500
Protein coverage (%)TK1151 91.824 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G308730
LocationChr02:78572507-78575700 (-)
DescriptionSimilar to LA1: La protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g32720 Binds to the 3' poly(U) terminus of nascent RNA polymerase III transcripts, protecting them from exonuclease digestion and facilitating their folding and maturation. No verified direct reference in this release
At1g79880 Binds to the 3' poly(U) terminus of nascent RNA polymerase III transcripts, protecting them from exonuclease digestion and facilitating their folding and maturation. No verified direct reference in this release
At2g43970 Transcriptional regulator. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015629 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001682 tRNA 5'-leader removal Biological Process
GO:0006364 rRNA processing Biological Process
GO:0006400 tRNA modification Biological Process
GO:0006409 tRNA export from nucleus Biological Process
GO:0008033 tRNA processing Biological Process
GO:0008334 histone mRNA metabolic process Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0031126 sno(s)RNA 3'-end processing Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0042780 tRNA 3'-end processing Biological Process
GO:0045727 positive regulation of translation Biological Process
GO:0071045 nuclear histone mRNA catabolic process Biological Process
KEGG gene cross-reference
ath:AT1G79880
ath:AT4G32720
bta:338071
hsa:6741
sce:YDL051W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.759
Rank 1 · TkA02G308730 · TK1151
Cytoplasm0.316
Rank 2 · TkA02G308730 · TK1151
Mitochondrion0.043
Rank 3 · TkA02G308730 · TK1151
Cell membrane0.032
Rank 4 · TkA02G308730 · TK1151
Endoplasmic reticulum0.026
Rank 5 · TkA02G308730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05383La53-97 aa
PF13944Calycin_like64-134 aa
PF23085RRM_PARP14_3104-114 aa
PF00076RRM_1146-157 aa
PF00076RRM_1162-215 aa
PF08777RRM_3199-261 aa
PF23085RRM_PARP14_3199-226 aa
PF19977xRRM233-263 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G308730PF05383La53972.1e-1969.8
TkA02G308730PF13944Calycin_like641340.02715.4
TkA02G308730PF23085RRM_PARP14_31041140.1313.1
TkA02G308730PF00076RRM_11461572.4e-1144.0
TkA02G308730PF00076RRM_11622152.4e-1144.0
TkA02G308730PF08777RRM_31992615.7e-1865.6
TkA02G308730PF23085RRM_PARP14_31992260.1313.1
TkA02G308730PF19977xRRM2332630.009816.8
TkA02G308730PF08777RRM_33384315.7e-1865.6
TkA02G308730PF00076RRM_13443842.4e-1144.0
TkA02G308730PF23085RRM_PARP14_33464030.1313.1
TkA02G308730PF19977xRRM3544170.009816.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93ZV7Arabidopsis thalianasp|Q93ZV7|LA1_ARATH La protein 156.800%Swiss-ProtHigh
Q0V7U7Arabidopsis thalianasp|Q0V7U7|LA2_ARATH La protein 242.600%Swiss-ProtMedium
O80567Arabidopsis thalianasp|O80567|LRP6B_ARATH La-related protein 6B34.000%Swiss-ProtLow

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