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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G306890
Reference: TK1151 Chr: Chr02 Coordinates: 78112366-78114363 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1296 bp · TkA02G306890|TK1151|cDNA

ATGCCTCGAGTGTTACTCTTCTATGAGAGCTTCTACTTCTCTTCTCCCAAACCAGTTTACAGTCCCCATGGTCGTTTCCGCCTGTGCCGAGCTCGGGGATTTGGTGTACGGCATGACGAACACAACTTGGTGCTCAAAGTTGGGATATTTGAAGAAACCTCCGCGGTTGGGTCTTCATTCGTTTACATGTACTCAAAATGTGGGTATGTCGAGAGTGCACGACAGGTGTTCGACGAAATGCATCTGAGAGATGTAGTTTC...

CDS

Download CDS FASTA

1296 bp · TkA02G306890|TK1151|CDS

ATGCCTCGAGTGTTACTCTTCTATGAGAGCTTCTACTTCTCTTCTCCCAAACCAGTTTACAGTCCCCATGGTCGTTTCCGCCTGTGCCGAGCTCGGGGATTTGGTGTACGGCATGACGAACACAACTTGGTGCTCAAAGTTGGGATATTTGAAGAAACCTCCGCGGTTGGGTCTTCATTCGTTTACATGTACTCAAAATGTGGGTATGTCGAGAGTGCACGACAGGTGTTCGACGAAATGCATCTGAGAGATGTAGTTTC...

Protein

Download Protein FASTA

431 aa · TkA02G306890|TK1151|PROTEIN

MPRVLLFYESFYFSSPKPVYSPHGRFRLCRARGFGVRHDEHNLVLKVGIFEETSAVGSSFVYMYSKCGYVESARQVFDEMHLRDVVSWTALIIGYVQNGESENGLRCVIEMYRTSGDDNRPNFRTLEGGLQACGDLSSIYAGRCLHGEVPVKDIKLWTSIITTYAKSGCLKQCLNGFMEMLISGIHPDPMVIISAISSCSNLKDTNLGKCLHGYAIKSLMTHHTSVSNSLIDMYAKCGQIEKSEKIFNEMTKKDTVSWNV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G306890
TK1151 IDTkA02G306890
OH-1004 IDLXL04_015651
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)59.600
Protein coverage (%)TK1151 90.023 / OH-1004 78.861
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G306890
LocationChr02:78112366-78114363 (-)
DescriptionSimilar to PCMP-E98: Pentatricopeptide repeat-containing protein At4g39952, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g39952 Pentatricopeptide repeat-containing protein At4g39952, mitochondrial. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At3g15130 Putative pentatricopeptide repeat-containing protein At3g15130. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015651 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G18485
ath:AT3G03580
ath:AT4G39952
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.658
Rank 1 · TkA02G306890 · TK1151
Plastid0.189
Rank 2 · TkA02G306890 · TK1151
Nucleus0.047
Rank 3 · TkA02G306890 · TK1151
Cytoplasm0.037
Rank 4 · TkA02G306890 · TK1151
Cell membrane0.006
Rank 5 · TkA02G306890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N59-88 aa
PF01535PPR60-83 aa
PF23276TPR_2462-102 aa
PF13041PPR_263-81 aa
PF13428TPR_1463-81 aa
PF12854PPR_164-80 aa
PF02758PYRIN70-86 aa
PF17177PPR_long71-111 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G306890PF29070MSC6_N59880.001118.9
TkA02G306890PF01535PPR60833.3e-36121.7
TkA02G306890PF23276TPR_24621020.00318.2
TkA02G306890PF13041PPR_263812.2e-31108.4
TkA02G306890PF13428TPR_1463810.001319.9
TkA02G306890PF12854PPR_164809e-1864.4
TkA02G306890PF02758PYRIN70860.2912.1
TkA02G306890PF17177PPR_long711117.1e-0523.0
TkA02G306890PF22330Rib_mS39_PPR71970.2611.7
TkA02G306890PF13041PPR_2831132.2e-31108.4
TkA02G306890PF12854PPR_1831009e-1864.4
TkA02G306890PF13812PPR_3841113.7e-1143.6
TkA02G306890PF01535PPR861113.3e-36121.7
TkA02G306890PF13428TPR_14871180.001319.9
TkA02G306890PF13041PPR_21531882.2e-31108.4
TkA02G306890PF13812PPR_31531873.7e-1143.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E9N1Arabidopsis thalianasp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952, mitochondrial30.600%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914235.300%Swiss-ProtMedium
P0C898Arabidopsis thalianasp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g1513035.700%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic33.400%Swiss-ProtMedium
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic33.000%Swiss-ProtMedium

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