TkA02G300160 | RubberDandelionOmics

Gene overview

TkA02G300160

Reference: TK1151 Chr: Chr02 Coordinates: 76498012-76499202 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1004 bp · TkA02G300160|TK1151|cDNA

ATAGCTTGTTATATATTTTTTATTTTTTTAAATCAGAAATAAAGAGCAAATTAACTTCCATCGATGACGGTCCCTTGGCAGCCCAACATCTCTTCAGACTTCAGCCTCGAGACGTGACGGCGACTCTTTGCGTCTACATGAATCACGCCTGCTCGTTGCTGATCATCTTTGAAGAATTCAAGACGTGAAGTGGTTTACTTGATACTGATTGTTAAAGCAAAGCTCTCACTGAATAATTACTAACTGATGGCGGCGTATAG...

CDS

Download CDS FASTA

654 bp · TkA02G300160|TK1151|CDS

ATGGCGGCGTATAGAGCTGACGATGACTACGATTATCTGTTCAAAGTCGTTCTGATCGGAGACTCCGGTGTCGGCAAGTCTAACTTGCTTTCCAGGTTCACCAGGAACGAGTTCAGTCTTGAATCTAAGTCAACAATCGGTGTTGAGTTCGCCACCAGAAGTATTCGCGTTGATGACAAGATCATCAAGGCTCAGATTTGGGATACTGCCGGCCAAGAAAGGTACCGTGCAATCACGAGTGCGTACTACAGAGGAGCAGT...

Protein

Download Protein FASTA

217 aa · TkA02G300160|TK1151|PROTEIN

MAAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDTTRHVTFENVERWLKELRDHSDSNIVIMLVGNKADLRHLRAVSTEDAKTFAEKEKTYFMETSALEATNVEDSFTEVLTQIYHVVSRKALDIGNDTGSLPKGQTINVGSKDDVSAVKKVGCCSN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G300160`
TK1151 ID	TkA02G300160
OH-1004 ID	LXL04_015695
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G300160

Location Chr02:76498012-76499202 (+)

Description Similar to RABA1F: Ras-related protein RABA1f

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60860`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At3g15060`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At1g28550`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At4g18430`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015695 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0005768 endosome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0003924 GTPase activity Molecular Function

GO:0005525 GTP binding Molecular Function

KEGG gene cross-reference

ath:AT1G28550

ath:AT3G15060

ath:AT4G18430

ath:AT5G60860

nta:107770722

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.460

Rank 1 · TkA02G300160 · TK1151

Golgi apparatus0.379

Rank 2 · TkA02G300160 · TK1151

Cell membrane0.221

Rank 3 · TkA02G300160 · TK1151

Lysosome / Vacuole0.207

Rank 4 · TkA02G300160 · TK1151

Endoplasmic reticulum0.132

Rank 5 · TkA02G300160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf14-167 aa

PF00071Ras15-175 aa

PF08477Roc15-129 aa

PF01926MMR_HSR115-121 aa

PF04670Gtr1_RagA15-156 aa

PF05783DLIC15-117 aa

PF13479AAA_2415-41 aa

PF03266NTPase_115-108 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G300160	`PF00025`	Arf	14	167	2e-12	47.6
TkA02G300160	`PF00071`	Ras	15	175	6.4e-63	211.9
TkA02G300160	`PF08477`	Roc	15	129	1.5e-35	122.7
TkA02G300160	`PF01926`	MMR_HSR1	15	121	7.1e-07	30.1
TkA02G300160	`PF04670`	Gtr1_RagA	15	156	0.0023	18.1
TkA02G300160	`PF05783`	DLIC	15	117	0.061	12.9
TkA02G300160	`PF13479`	AAA_24	15	41	0.083	13.3
TkA02G300160	`PF03266`	NTPase_1	15	108	0.087	13.4
TkA02G300160	`PF10662`	PduV-EutP	15	56	0.18	12.3
TkA02G300160	`PF03193`	RsgA_GTPase	16	36	0.00015	22.4
TkA02G300160	`PF13401`	AAA_22	16	132	0.00089	20.3
TkA02G300160	`PF13191`	AAA_16	16	39	0.027	15.7
TkA02G300160	`PF00005`	ABC_tran	16	38	0.052	14.9
TkA02G300160	`PF13173`	AAA_14	16	127	0.062	14.0
TkA02G300160	`PF13238`	AAA_18	16	122	0.083	14.1
TkA02G300160	`PF05621`	TniB	16	37	0.1	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJH0`	Arabidopsis thaliana	sp\|Q9FJH0\|RAA1F_ARATH Ras-related protein RABA1f	89.900%	Swiss-Prot	High
`Q9LK99`	Arabidopsis thaliana	sp\|Q9LK99\|RAA1G_ARATH Ras-related protein RABA1g	87.100%	Swiss-Prot	High
`Q9S810`	Arabidopsis thaliana	sp\|Q9S810\|RAA1I_ARATH Ras-related protein RABA1i	82.500%	Swiss-Prot	High
`O49513`	Arabidopsis thaliana	sp\|O49513\|RAA1E_ARATH Ras-related protein RABA1e	81.900%	Swiss-Prot	High

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