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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G295010
Reference: TK1151 Chr: Chr02 Coordinates: 75262578-75265068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1218 bp · TkA02G295010|TK1151|cDNA

ATGGCAACAAACCGGTTTATATGTGAAGTATGCAACAAAGGGTTCCAAAGGGAACAAAACTTGCAGCTCCATAGAAGAGGGCACAATCTGCCATGGAAGCTCAAGCAAAAGAGCAACAAAGAAGTCAAGAGGAAGGTTTATCTATGTCCGGAGCCGTCATGCGTCCACCATGATCCGTCGCGAGCATTAGGAGACCTCACCGGAATCAAGAAACACTATTCCAGAAAGCATGGCGAGAAGAAATACAAGTGTGAGAAGTG...

CDS

Download CDS FASTA

1218 bp · TkA02G295010|TK1151|CDS

ATGGCAACAAACCGGTTTATATGTGAAGTATGCAACAAAGGGTTCCAAAGGGAACAAAACTTGCAGCTCCATAGAAGAGGGCACAATCTGCCATGGAAGCTCAAGCAAAAGAGCAACAAAGAAGTCAAGAGGAAGGTTTATCTATGTCCGGAGCCGTCATGCGTCCACCATGATCCGTCGCGAGCATTAGGAGACCTCACCGGAATCAAGAAACACTATTCCAGAAAGCATGGCGAGAAGAAATACAAGTGTGAGAAGTG...

Protein

Download Protein FASTA

405 aa · TkA02G295010|TK1151|PROTEIN

MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYSRKHGEKKYKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARHPSALGTIGSHLFGNHLSNSMNLGSNNNPTNNTLKNSDQNDTQNSNTNMSSPGFMIPDHNQFNTGSGSHDHMFLNSNNSHQETQMTPHMSATALLQKAAQMGSTTSNNNATTLLKSFGSSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G295010
TK1151 IDTkA02G295010
OH-1004 IDLXL04_015717
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)71.800
Protein coverage (%)TK1151 97.284 / OH-1004 82.903
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G295010
LocationChr02:75262578-75265068 (+)
DescriptionSimilar to IDD4: Protein indeterminate-domain 4, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g02070 Transcription factor acting as a positive regulator of the starch synthase SS4.
Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model.2012 · DOI: 10.1186/1752-0509-6-100
At2g02080 Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). No verified direct reference in this release
At1g14580 Probable transcription factor. No verified direct reference in this release
At1g55110 Probable transcription factor. No verified direct reference in this release
At3g50700 Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015717 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002221 pattern recognition receptor signaling pathway Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0008356 asymmetric cell division Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009937 regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0010029 regulation of seed germination Biological Process
GO:0010336 gibberellic acid homeostasis Biological Process
GO:0010431 seed maturation Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048364 root development Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G14580
ath:AT2G02070
ath:AT2G02080
ath:AT3G50700
ath:AT5G66730
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965
Rank 1 · TkA02G295010 · TK1151
Cytoplasm0.140
Rank 2 · TkA02G295010 · TK1151
Cell membrane0.017
Rank 3 · TkA02G295010 · TK1151
Mitochondrion0.014
Rank 4 · TkA02G295010 · TK1151
Endoplasmic reticulum0.007
Rank 5 · TkA02G295010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22995C2CH-3rd_BIRD-IDD5-15 aa
PF13912zf-C2H2_65-28 aa
PF00096zf-C2H26-28 aa
PF12171zf-C2H2_jaz6-28 aa
PF12874zf-met6-28 aa
PF13894zf-C2H2_46-28 aa
PF23447DUF71286-22 aa
PF23108Zf-C2H2_ZNF4516-24 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G295010PF22995C2CH-3rd_BIRD-IDD5153.1e-1556.2
TkA02G295010PF13912zf-C2H2_65280.0003721.1
TkA02G295010PF00096zf-C2H26281.7e-0628.9
TkA02G295010PF12171zf-C2H2_jaz6280.0001222.9
TkA02G295010PF12874zf-met6280.0001922.3
TkA02G295010PF13894zf-C2H2_46280.007917.5
TkA02G295010PF23447DUF71286220.008316.7
TkA02G295010PF23108Zf-C2H2_ZNF4516240.2911.7
TkA02G295010PF21361Sina_ZnF29770.5411.4
TkA02G295010PF22996C2H2-2nd_BIRD-IDD43771.5e-2280.1
TkA02G295010PF23108Zf-C2H2_ZNF451651000.2911.7
TkA02G295010PF13894zf-C2H2_467770.007917.5
TkA02G295010PF23447DUF7128761060.008316.7
TkA02G295010PF22995C2CH-3rd_BIRD-IDD811053.1e-1556.2
TkA02G295010PF12171zf-C2H2_jaz811000.0001222.9
TkA02G295010PF21361Sina_ZnF811130.5411.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUL3Arabidopsis thalianasp|Q9ZUL3|IDD5_ARATH Protein indeterminate-domain 5, chloroplastic87.100%Swiss-ProtLow
Q8GYC1Arabidopsis thalianasp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic45.500%Swiss-ProtMedium
Q8RWX7Arabidopsis thalianasp|Q8RWX7|IDD6_ARATH Protein indeterminate-domain 6, chloroplastic90.100%Swiss-ProtLow
Q8H1F5Arabidopsis thalianasp|Q8H1F5|IDD7_ARATH Protein indeterminate-domain 758.700%Swiss-ProtMedium
Q9SCQ6Arabidopsis thalianasp|Q9SCQ6|IDD2_ARATH Zinc finger protein GAI-ASSOCIATED FACTOR 187.800%Swiss-ProtLow

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