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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G281590
Reference: TK1151 Chr: Chr02 Coordinates: 71879254-71881510 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2163 bp · TkA02G281590|TK1151|cDNA

TTCACAACTACTCAACTGGTCACATGGACACTTAGATGACGGCGTGTAATACGTAGTCCGTGCCAAGAATTTGAATTCAAAATCAAACCCTAAACCCTCTCTTCTTACCAGTTACCCCCATCACTCGCTTTGAAAACCCTAGAGCCCCTCATCTTCGATCTCAGTACCAAACCCTAATCCATGGCGAAAAAGAAAACAAAACAACTACAATCCGAAGAAAACATACCGCCCACAACACAACATGAAATCCCTCGGCAAAC...

CDS

Download CDS FASTA

1779 bp · TkA02G281590|TK1151|CDS

ATGGCGAAAAAGAAAACAAAACAACTACAATCCGAAGAAAACATACCGCCCACAACACAACATGAAATCCCTCGGCAAACCACTGATGACGCTGCTTCTGAGAAACTCGACAGCTTGAAATCACTGAATGCTATGTTGCTCAAAGAGACCGTCGAGCGCCGTCATCAGGTAGATTCGTTAACCCAGACTAACTCTTCTCTGGAATCTGAATTGAATCGGTGTAAGTCCGACAAGGTTTCATTGGAATCCGAGTTCAGTGG...

Protein

Download Protein FASTA

592 aa · TkA02G281590|TK1151|PROTEIN

MAKKKTKQLQSEENIPPTTQHEIPRQTTDDAASEKLDSLKSLNAMLLKETVERRHQVDSLTQTNSSLESELNRCKSDKVSLESEFSGLTERAMMLEIEKESASRFVALQLDEMTNVNRRERAALEEKIEGLVREINRVSKEKNAIEEEKNKKESEIGSLNGRLNSLVTQVGEEKFAFSKVCEERDGIKAQLHDRIQYEKGLRSKLTEAEKREAEITENSQKVKAAYVGLVEEKKLTDRKVDSILKDKDLVEMNLAESNRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G281590
TK1151 IDTkA02G281590
OH-1004 IDLXL04_016014
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.700
Protein coverage (%)TK1151 95.101 / OH-1004 93.367
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G281590
LocationChr02:71879254-71881510 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016014 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007155 cell adhesion Biological Process
GO:0007165 signal transduction Biological Process
GO:0009888 tissue development Biological Process
GO:0030334 regulation of cell migration Biological Process
GO:0045785 positive regulation of cell adhesion Biological Process
GO:0045995 regulation of embryonic development Biological Process
GO:0110011 regulation of basement membrane organization Biological Process
GO:2001046 positive regulation of integrin-mediated signaling pathway Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005604 basement membrane Cellular Component
GO:0005607 laminin-211 trimer Cellular Component
GO:0005609 laminin-221 trimer Cellular Component
KEGG gene cross-reference
hsa:3908
mmu:16773
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.283
Rank 1 · TkA02G281590 · TK1151
Cytoplasm0.194
Rank 2 · TkA02G281590 · TK1151
Mitochondrion0.186
Rank 3 · TkA02G281590 · TK1151
Nucleus0.138
Rank 4 · TkA02G281590 · TK1151
Endoplasmic reticulum0.075
Rank 5 · TkA02G281590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28019HmpF26-112 aa
PF14197Cep57_CLD_230-77 aa
PF09728Taxilin31-322 aa
PF04899MbeD_MobD43-73 aa
PF10473CENP-F_leu_zip48-106 aa
PF11932DUF345055-119 aa
PF28019HmpF69-231 aa
PF14197Cep57_CLD_2100-151 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G281590PF28019HmpF261120.07112.3
TkA02G281590PF14197Cep57_CLD_230770.1612.8
TkA02G281590PF09728Taxilin313220.005516.7
TkA02G281590PF04899MbeD_MobD43730.03415.0
TkA02G281590PF10473CENP-F_leu_zip481060.005217.6
TkA02G281590PF11932DUF3450551191.98.5
TkA02G281590PF28019HmpF692310.07112.3
TkA02G281590PF14197Cep57_CLD_21001510.1612.8
TkA02G281590PF04899MbeD_MobD1091410.03415.0
TkA02G281590PF10473CENP-F_leu_zip1171930.005217.6
TkA02G281590PF11932DUF34501231991.98.5
TkA02G281590PF14197Cep57_CLD_21532100.1612.8
TkA02G281590PF11932DUF34502022791.98.5
TkA02G281590PF10473CENP-F_leu_zip2032990.005217.6
TkA02G281590PF28019HmpF2514150.07112.3
TkA02G281590PF14197Cep57_CLD_22622990.1612.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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