TkA02G264600 | RubberDandelionOmics

Gene overview

TkA02G264600

Reference: TK1151 Chr: Chr02 Coordinates: 67753806-67755233 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

732 bp · TkA02G264600|TK1151|cDNA

GAAGGAAGTGATAAGGTGAAAGCAGCGGTTGTTGAAGCCATCAAGGTGGGTTATTGCCACTTTGACACTGCGGCAGTTTATGGAACCGAGAAAGTTCTCGGTGAAGGCATCGCAGAAGCTCTGCAACTGGGTCTCATAAAGCCACGTGCCGAGCTTTTTGTTACTACCAAGCTGTGGTGTAACTCCACCGCCGGCCATCTTGTGCTACCAGCCATAAAACAGAGTCTCCGGAACTTAGGTCTACAGTACGTGGATCTAAA...

CDS

Download CDS FASTA

732 bp · TkA02G264600|TK1151|CDS

GAAGGAAGTGATAAGGTGAAAGCAGCGGTTGTTGAAGCCATCAAGGTGGGTTATTGCCACTTTGACACTGCGGCAGTTTATGGAACCGAGAAAGTTCTCGGTGAAGGCATCGCAGAAGCTCTGCAACTGGGTCTCATAAAGCCACGTGCCGAGCTTTTTGTTACTACCAAGCTGTGGTGTAACTCCACCGCCGGCCATCTTGTGCTACCAGCCATAAAACAGAGTCTCCGGAACTTAGGTCTACAGTACGTGGATCTAAA...

Protein

Download Protein FASTA

243 aa · TkA02G264600|TK1151|PROTEIN

EGSDKVKAAVVEAIKVGYCHFDTAAVYGTEKVLGEGIAEALQLGLIKPRAELFVTTKLWCNSTAGHLVLPAIKQSLRNLGLQYVDLNLIHWPLKLNQEEFKFPVPKELIAAINIKDVWEGMENCQNLGLTKSIGVSNFAPRRIQEILSFAKIPPAVNQVEMNPVWQQKNLNEFCKKNGILLTAYSPLGAFGTKWGHNRVMECDVLQDVAKSKGKTVAQVLYLFSFSYKMFSVNGVEVSFSLFQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G264600`
TK1151 ID	TkA02G264600
OH-1004 ID	LXL04_022462
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 98.780 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G264600`
Location	Chr02:67753806-67755233 (-)
Description	Similar to GALUR: D-galacturonate reductase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_022462` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009820 alkaloid metabolic process Biological Process GO:0019853 L-ascorbic acid biosynthetic process Biological Process GO:0044550 secondary metabolite biosynthetic process Biological Process GO:0005829 cytosol Cellular Component GO:0016491 oxidoreductase activity Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function GO:0047036 codeinone reductase (NADPH) activity Molecular Function GO:0102098 D-galacturonate reductase activity Molecular Function
KEGG gene cross-reference	ag:AAB97005 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.640

Rank 1 · TkA02G264600 · TK1151

Nucleus0.272

Rank 2 · TkA02G264600 · TK1151

Mitochondrion0.104

Rank 3 · TkA02G264600 · TK1151

Peroxisome0.080

Rank 4 · TkA02G264600 · TK1151

Cell membrane0.065

Rank 5 · TkA02G264600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00248Aldo_ket_red4-226 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G264600	`PF00248`	Aldo_ket_red	4	226	3.1e-41	142.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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