TkA02G261070 | RubberDandelionOmics

Gene overview

TkA02G261070

Reference: TK1151 Chr: Chr02 Coordinates: 66602036-66602590 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

393 bp · TkA02G261070|TK1151|cDNA

ATGAACAACTTTATTCCTTATCCATTCTATGTAGGGTCAGGGGCCGGGTTTGACGTGAGCTATGAAGATGAGAAGTTTAGTGATCTTTTAAGGCCGGTTGCCTCAGTGGATTTCTCGTATAACAATCTCTCCGGCTTGGTTCCGGGAACCGGTCAGTTTAGCTACTTCAATTACACCTTGTTTTTGGGTAATCCGGATCTTTGCGGCCCCTATCTAGGACCCTGTAAAGACGGCGTGGAGGTGCCGGGATCATCGGAAAA...

CDS

Download CDS FASTA

393 bp · TkA02G261070|TK1151|CDS

ATGAACAACTTTATTCCTTATCCATTCTATGTAGGGTCAGGGGCCGGGTTTGACGTGAGCTATGAAGATGAGAAGTTTAGTGATCTTTTAAGGCCGGTTGCCTCAGTGGATTTCTCGTATAACAATCTCTCCGGCTTGGTTCCGGGAACCGGTCAGTTTAGCTACTTCAATTACACCTTGTTTTTGGGTAATCCGGATCTTTGCGGCCCCTATCTAGGACCCTGTAAAGACGGCGTGGAGGTGCCGGGATCATCGGAAAA...

Protein

Download Protein FASTA

130 aa · TkA02G261070|TK1151|PROTEIN

MNNFIPYPFYVGSGAGFDVSYEDEKFSDLLRPVASVDFSYNNLSGLVPGTGQFSYFNYTLFLGNPDLCGPYLGPCKDGVEVPGSSEKEVPGSSTKASCQTTSTWRSAHDHGFNTEIQTLGEKPDGREAIR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G261070`
TK1151 ID	TkA02G261070
OH-1004 ID	LXL04_024213
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.700
Protein coverage (%)	TK1151 48.462 / OH-1004 19.200 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G261070

Location Chr02:66602036-66602590 (-)

Description Similar to BAM1: Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65700`	LRR-rich receptor-like kinase (LRR-RLK) that, similarly to CLV1 and BAM3, participates in the detection of the CLAVATA-family peptides (e.g. CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and of PBL34, PBL35 and PBL36.	No verified direct reference in this release
`At3g49670`	LRR-rich receptor-like kinase (LRR-RLK) implicated in the detection of the CLAVATA-family peptides (CLEs), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and, probably, of PBL34, PBL35 and PBL36.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0777400`	Receptor kinase that may be involved in the regulation of cell proliferation and cell growth.	No verified direct reference in this release
`Os06g0203800`	Receptor kinase involved in the regulation of thermotolerance.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024213 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007172 signal complex assembly Biological Process

GO:0009755 hormone-mediated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0010075 regulation of meristem growth Biological Process

GO:0030154 cell differentiation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0036289 peptidyl-serine autophosphorylation Biological Process

GO:0048229 gametophyte development Biological Process

GO:0048437 floral organ development Biological Process

GO:2000037 regulation of stomatal complex patterning Biological Process

GO:0000325 plant-type vacuole Cellular Component

KEGG gene cross-reference

ath:AT1G75820

ath:AT3G49670

ath:AT5G65700

mtr:11439632

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.344

Rank 1 · TkA02G261070 · TK1151

Cytoplasm0.212

Rank 2 · TkA02G261070 · TK1151

Nucleus0.176

Rank 3 · TkA02G261070 · TK1151

Endoplasmic reticulum0.172

Rank 4 · TkA02G261070 · TK1151

Extracellular0.163

Rank 5 · TkA02G261070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O49545`	Arabidopsis thaliana	sp\|O49545\|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	96.700%	Swiss-Prot	Low
`Q9M2Z1`	Arabidopsis thaliana	sp\|Q9M2Z1\|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2	76.700%	Swiss-Prot	Low
`I1Z695`	Oryza sativa subsp. japonica	sp\|I1Z695\|EREC2_ORYSJ LRR receptor-like serine/threonine-protein kinase ER2	55.300%	Swiss-Prot	Low
`Q69SP5`	Oryza sativa subsp. japonica	sp\|Q69SP5\|EREC1_ORYSJ LRR receptor-like serine/threonine-protein kinase ER1	55.300%	Swiss-Prot	Low

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