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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G259240
Reference: TK1151 Chr: Chr02 Coordinates: 66161363-66167579 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4067 bp · TkA02G259240|TK1151|cDNA

TTCACTCTACCGTTGACTCTAATTTGCTGATCCTATGCTCTGGTTTTAGCCAAAACCAGCGAGTCTATAATCATTTGTTCAGAACTTCATCTGAGAAGAACTTCAACAATGGTAGACGGTTCGCTGTATTCACCTCTGCAACCTAATCCACCATCTGAAACAGACGAAAATGTTACTCCGATGGCCAAAGCCGGAATGTTAAGTAAAAGCACATTCTGGTGGCTAAATCCGTTGATGAGAAAAGGAAAAAGTAAAGTTCT...

CDS

Download CDS FASTA

1914 bp · TkA02G259240|TK1151|CDS

ATGGTAGACGGTTCGCTGTATTCACCTCTGCAACCTAATCCACCATCTGAAACAGACGAAAATGTTACTCCGATGGCCAAAGCCGGAATGTTAAGTAAAAGCACATTCTGGTGGCTAAATCCGTTGATGAGAAAAGGAAAAAGTAAAGTTCTCGACGATAAAGACATCCCAAAGTTAAGAAAAGAAGACACATCAGAAGAATGTTACACCAGATTCATGGAGACGCTGGAGAAACGGCGAGCAAAGAGTGTTTCCGGTGG...

Protein

Download Protein FASTA

637 aa · TkA02G259240|TK1151|PROTEIN

MVDGSLYSPLQPNPPSETDENVTPMAKAGMLSKSTFWWLNPLMRKGKSKVLDDKDIPKLRKEDTSEECYTRFMETLEKRRAKSVSGGHGDSDPSLLSTLFVWQWKGLVITGFFALIKVLALASGPLILRAFIQLVQGKESFKNEGYFLTAGLFLAKCLESISERQLKFRSRLIGLQLKSMLCAAIYKKQLRLSNDAKLIYSPGQIMNYATVDANRIGEVPFWFHNVWTIALQICLGILIIYYSIGAATIAALLAIILTVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G259240
TK1151 IDTkA02G259240
OH-1004 IDLXL04_029562
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 96.389 / OH-1004 48.233
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G259240
LocationChr02:66161363-66167579 (-)
DescriptionSimilar to ABCC10: ABC transporter C family member 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g59140 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g13080 Pump for glutathione S-conjugates.
An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity.1998 · DOI: 10.1046/j.1365-313x.1998.00076.x

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XCD4 ABC transporter that may affect phytic acid transport and compartmentalization. No verified direct reference in this release
Os03g0142800 ABC transporter that may affect phytic acid transport and compartmentalization.
Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.2009 · DOI: 10.1007/s00122-009-1018-1
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029562 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0030007 intracellular potassium ion homeostasis Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008281 sulfonylurea receptor activity Molecular Function
GO:0008559 ABC-type xenobiotic transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G04120
ath:AT3G59140
dosa:Os03g0142800
zma:100125659
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.418
Rank 1 · TkA02G259240 · TK1151
Lysosome / Vacuole0.231
Rank 2 · TkA02G259240 · TK1151
Endoplasmic reticulum0.197
Rank 3 · TkA02G259240 · TK1151
Cytoplasm0.186
Rank 4 · TkA02G259240 · TK1151
Golgi apparatus0.097
Rank 5 · TkA02G259240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13401AAA_2260-81 aa
PF00664ABC_membrane108-373 aa
PF02492cobW398-430 aa
PF03193RsgA_GTPase422-472 aa
PF00005ABC_tran438-572 aa
PF01935DUF87441-473 aa
PF02463SMC_N446-470 aa
PF13476AAA_23446-468 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G259240PF13401AAA_2260810.01116.8
TkA02G259240PF00664ABC_membrane1083736.1e-1969.5
TkA02G259240PF02492cobW3984300.5410.6
TkA02G259240PF03193RsgA_GTPase4224720.006717.0
TkA02G259240PF00005ABC_tran4385722e-2384.2
TkA02G259240PF01935DUF874414730.113.4
TkA02G259240PF02463SMC_N4464700.0001621.9
TkA02G259240PF13476AAA_234464680.01716.5
TkA02G259240PF13555AAA_294484680.002918.1
TkA02G259240PF01926MMR_HSR14504750.02215.6
TkA02G259240PF00931NB-ARC4505030.02714.7
TkA02G259240PF03266NTPase_14504730.03114.8
TkA02G259240PF00009GTP_EFTU4504820.1412.4
TkA02G259240PF13401AAA_224514820.01116.8
TkA02G259240PF00350Dynamin_N4514820.01116.5
TkA02G259240PF02492cobW4514710.5410.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LYS2Arabidopsis thalianasp|Q9LYS2|AB10C_ARATH ABC transporter C family member 1054.000%Swiss-ProtHigh
Q9LK64Arabidopsis thalianasp|Q9LK64|AB3C_ARATH ABC transporter C family member 344.400%Swiss-ProtMedium
A2XCD4Oryza sativa subsp. indicasp|A2XCD4|AB13C_ORYSI ABC transporter C family member 1344.500%Swiss-ProtMedium
Q10RX7Oryza sativa subsp. japonicasp|Q10RX7|AB13C_ORYSJ ABC transporter C family member 1344.500%Swiss-ProtMedium

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