TkA02G221320 | RubberDandelionOmics

Gene overview

TkA02G221320

Reference: TK1151 Chr: Chr02 Coordinates: 57347199-57349474 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1256 bp · TkA02G221320|TK1151|cDNA

TAAAATATGAGACCTGTTTATGAAAAAAGCTATTTCGGAACTAACTTCCAACTCTTCTGTTTTAGCCCTAAAATTTTATTTTATTACAAAATAGACCCAACATTAACAATCTACTTGTCCTTTTATAGATTGAACCGGTTACCTAAACTCCAACCGGTAAATTGGTCCACCACGGTGACCAACACTCCAAATCTCCAATACCCTATCCTCTGGTGTCGTCGGCGCTGGGAACGAGGGGTTTCAGCAGCTTTCAGATATGC...

CDS

Download CDS FASTA

636 bp · TkA02G221320|TK1151|CDS

ATGCATGTAGAACCCTTCCAGACTTGGTATTGTTTTCAAGATCGTAAAGACTTTGACAGCTTCTTGTTGGCAGTGTTTGTTGCATCAAAAGTTGTAATGGAGAGATACGAGATACTGAAAGACATAGGATCCGGGAATTTTGGAGTCGCAAAGCTTGTTAAAGACAAGTCTTCCGGTGAGCTTTTTGCTGTCAAATACATCGACAGAGGCCAAAAGATTGATGAGCATGTAGAAAGAGAGATTTTGAACCACAGATCACT...

Protein

Download Protein FASTA

211 aa · TkA02G221320|TK1151|PROTEIN

MHVEPFQTWYCFQDRKDFDSFLLAVFVASKVVMERYEILKDIGSGNFGVAKLVKDKSSGELFAVKYIDRGQKIDEHVEREILNHRSLKHPNIIRFKEVLLTETHLAIVMEYAAGGELFDRICTAGRFSEDEARFYFRQLISGVSYCHSMQICHRDLKLENTLLDESSTTTHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSKKSMMI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G221320`
TK1151 ID	TkA02G221320
OH-1004 ID	LXL04_015843
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.200
Protein coverage (%)	TK1151 98.104 / OH-1004 57.035 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G221320

Location Chr02:57347199-57349474 (-)

Description Similar to SAPK2: Serine/threonine-protein kinase SAPK2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g40010`	Serine/threonine-protein kinase SRK2F.	No verified direct reference in this release
`At1g78290`	Involved in gene regulation and confers tolerance to drought and osmotic stress.	SRK2C, a SNF1-related protein kinase 2, improves drought tolerance by controlling stress-responsive gene expression in Arabidopsis thaliana.2004 · DOI: 10.1073/pnas.0407758101

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0390200`	May play a role in signal transduction of hyperosmotic response.	No verified direct reference in this release
`UniProt: A2YNT8`	May play a role in signal transduction of hyperosmotic response (By similarity).	No verified direct reference in this release
`Os07g0622000`	May play a role in signal transduction of hyperosmotic response (Probable).	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.2012 · DOI: 10.1093/jxb/err338

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015843 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0090351 seedling development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

dosa:Os03g0390200

dosa:Os07g0622000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.605

Rank 1 · TkA02G221320 · TK1151

Nucleus0.420

Rank 2 · TkA02G221320 · TK1151

Cell membrane0.129

Rank 3 · TkA02G221320 · TK1151

Mitochondrion0.092

Rank 4 · TkA02G221320 · TK1151

Golgi apparatus0.073

Rank 5 · TkA02G221320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase36-208 aa

PF07714PK_Tyr_Ser-Thr38-208 aa

PF01633Choline_kinase74-84 aa

PF06293Kdo104-179 aa

PF17667Pkinase_fungal146-206 aa

PF01633Choline_kinase147-181 aa

PF12330Haspin_kinase149-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G221320	`PF00069`	Pkinase	36	208	1.1e-52	179.8
TkA02G221320	`PF07714`	PK_Tyr_Ser-Thr	38	208	4.2e-23	82.7
TkA02G221320	`PF01633`	Choline_kinase	74	84	0.1	12.6
TkA02G221320	`PF06293`	Kdo	104	179	0.023	14.9
TkA02G221320	`PF17667`	Pkinase_fungal	146	206	0.13	11.6
TkA02G221320	`PF01633`	Choline_kinase	147	181	0.1	12.6
TkA02G221320	`PF12330`	Haspin_kinase	149	183	0.082	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SMQ4`	Arabidopsis thaliana	sp\|Q9SMQ4\|SRK2F_ARATH Serine/threonine-protein kinase SRK2F	82.900%	Swiss-Prot	High
`Q9M9E9`	Arabidopsis thaliana	sp\|Q9M9E9\|SRK2C_ARATH Serine/threonine-protein kinase SRK2C	84.600%	Swiss-Prot	High
`Q75LR7`	Oryza sativa subsp. japonica	sp\|Q75LR7\|SAPK1_ORYSJ Serine/threonine-protein kinase SAPK1	84.600%	Swiss-Prot	High
`A2YNT8`	Oryza sativa subsp. indica	sp\|A2YNT8\|SAPK2_ORYSI Serine/threonine-protein kinase SAPK2	84.000%	Swiss-Prot	High
`Q0D4J7`	Oryza sativa subsp. japonica	sp\|Q0D4J7\|SAPK2_ORYSJ Serine/threonine-protein kinase SAPK2	83.400%	Swiss-Prot	High

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