TkA02G206840 | RubberDandelionOmics

Gene overview

TkA02G206840

Reference: TK1151 Chr: Chr02 Coordinates: 52804300-52805340 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

387 bp · TkA02G206840|TK1151|cDNA

ATGGCCACCGCTGCAACTGCCACCACTGCTGCAAAGAGGACTGCCGTCAAAAAACCAACAGAGAAACCAACGAAGAAACCGAAGCAAGATTCTGCTGAGAAATCGTTGAAACCTATTGGCATTCTGAAACCAACTCCGATTTCTCCACCCCTAGCTCACTTCCTCGGAGTCTATGAGTCCGATCGCACCGGAGGCGTTAAGAAAATTTGGCAGTACATCAAGCTCCATGAACTTCATGTCACTTCCTCGGAGTCTCTGAG...

CDS

Download CDS FASTA

387 bp · TkA02G206840|TK1151|CDS

ATGGCCACCGCTGCAACTGCCACCACTGCTGCAAAGAGGACTGCCGTCAAAAAACCAACAGAGAAACCAACGAAGAAACCGAAGCAAGATTCTGCTGAGAAATCGTTGAAACCTATTGGCATTCTGAAACCAACTCCGATTTCTCCACCCCTAGCTCACTTCCTCGGAGTCTATGAGTCCGATCGCACCGGAGGCGTTAAGAAAATTTGGCAGTACATCAAGCTCCATGAACTTCATGTCACTTCCTCGGAGTCTCTGAG...

Protein

Download Protein FASTA

128 aa · TkA02G206840|TK1151|PROTEIN

MATAATATTAAKRTAVKKPTEKPTKKPKQDSAEKSLKPIGILKPTPISPPLAHFLGVYESDRTGGVKKIWQYIKLHELHVTSSESLSLLAPEALRKFGSTSSSMSFRCKWCNGSCVLFPLLLLFFWPG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G206840`
TK1151 ID	TkA02G206840
OH-1004 ID	LXL04_033656
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	75.000
Protein coverage (%)	TK1151 46.875 / OH-1004 33.898 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G206840`
Location	Chr02:52804300-52805340 (-)
Description	Similar to spp27: Upstream activation factor subunit spp27 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033656` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006361 transcription initiation at RNA polymerase I promoter Biological Process GO:0042790 nucleolar large rRNA transcription by RNA polymerase I Biological Process GO:0000500 RNA polymerase I upstream activating factor complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0001165 RNA polymerase I cis-regulatory region sequence-specific DNA binding Molecular Function GO:0001181 RNA polymerase I general transcription initiation factor activity Molecular Function
KEGG gene cross-reference	spo:2539310 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.704

Rank 1 · TkA02G206840 · TK1151

Cytoplasm0.285

Rank 2 · TkA02G206840 · TK1151

Endoplasmic reticulum0.050

Rank 3 · TkA02G206840 · TK1151

Mitochondrion0.050

Rank 4 · TkA02G206840 · TK1151

Cell membrane0.036

Rank 5 · TkA02G206840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02201SWIB43-79 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G206840	`PF02201`	SWIB	43	79	2.4e-09	37.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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