Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2351 bp · TkA02G205470|TK1151|cDNA
GTTAATTCCCGTTTTTAGTATCTCGGACAATTAGCAATTGAGAAAAGTCGGGATATACACGAAGGTTAATCAGGTATTCAGGTGAGACATAACATATCAGCGAGGAAAACTTTACAGTACAATTGTTCCATTCAATGGCGGAAGATTCAGAGAAGAGATTTCACGCCGTCATGGATAAGCTGTTCTTTGCTCCTCCTCCCAGCTCCAAACCCACGAGAACTCCCCGTTCGTCTAGTGCAACTGCAGGTGGATTTTTCAGA...
1089 bp · TkA02G205470|TK1151|CDS
ATGTGGGGCCGTCTCTTCTTTTCTACTCCATCATCTTGGGCACAACAACAAGTTGAAAATGCAGCCTCGGTTTTCAGCATAAAACTGAATAATGGACACAAGTTACTCTGTCCATGGGTTGACAATGCTTGTGATGAAAAGCTAGCACAGTTCCCTCCAACCTCACAGCTAAATTTGGTTGATGACTACAAGACACGATGTGCATCATTACTGCAACTTTTAGAGCTTCCCGTGATCTCATCATCAGCCATTAATCACAT...
Protein
Download Protein FASTA362 aa · TkA02G205470|TK1151|PROTEIN
MWGRLFFSTPSSWAQQQVENAASVFSIKLNNGHKLLCPWVDNACDEKLAQFPPTSQLNLVDDYKTRCASLLQLLELPVISSSAINHMQDPLLEHFLKNPPTLDMYYQAQKLISLCGWEPKLLPYIVDCKDITLETHNSTMTVYSSNLDANIHENNDHTSVVLECRLCGARVGLWAFTTTPQPAEFVRLIGHAEPTTVDSVEEVQTTGPTSCNRNVLNLTIAGGPPPAEQDFRPTISLPVVGQNLRTRFSSAFQSVHLPQD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G205470 |
|---|---|
| TK1151 ID | TkA02G205470 |
| OH-1004 ID | LXL04_008772 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 98.900 |
| Protein coverage (%) | TK1151 99.171 / OH-1004 72.819Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G205470 |
|---|---|
| Location | Chr02:52475188-52478449 (-) |
| Description | Similar to zc3hc1: NIPA-like protein |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0016567 protein ubiquitination Biological Process GO:0051301 cell division Biological Process GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0031965 nuclear membrane Cellular Component GO:0044615 nuclear pore nuclear basket Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0019901 protein kinase binding Molecular Function |
| KEGG gene cross-reference | hsa:51530 mmu:232679 pon:100174537 xla:399009 xtr:496709 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07967zf-C3HC9-78 aaPF08600NuBaID_C16-45 aaPF00751DM30-45 aaPF08600NuBaID_C112-118 aaPF09416UPF1_Zn_bind132-170 aaPF08600NuBaID_C156-300 aaPF07967zf-C3HC161-173 aaPF09416UPF1_Zn_bind269-298 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G205470 | PF07967 | zf-C3HC | 9 | 78 | 1.6e-10 | 41.8 |
| TkA02G205470 | PF08600 | NuBaID_C | 16 | 45 | 6.6e-11 | 43.0 |
| TkA02G205470 | PF00751 | DM | 30 | 45 | 0.012 | 16.2 |
| TkA02G205470 | PF08600 | NuBaID_C | 112 | 118 | 6.6e-11 | 43.0 |
| TkA02G205470 | PF09416 | UPF1_Zn_bind | 132 | 170 | 0.064 | 13.9 |
| TkA02G205470 | PF08600 | NuBaID_C | 156 | 300 | 6.6e-11 | 43.0 |
| TkA02G205470 | PF07967 | zf-C3HC | 161 | 173 | 1.6e-10 | 41.8 |
| TkA02G205470 | PF09416 | UPF1_Zn_bind | 269 | 298 | 0.064 | 13.9 |
| TkA02G205470 | PF00751 | DM | 281 | 292 | 0.012 | 16.2 |
| TkA02G205470 | PF07967 | zf-C3HC | 283 | 293 | 1.6e-10 | 41.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.