Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3947 bp · TkA02G195780|TK1151|cDNA
CAAACACATAGAAATGAAATGAAACTACACAAGCCCTTGTGGGTTTGGGCTTTTGCTTCTTCTTACTCATGTTTGATACAATAAGTACCTGAATTCTCTCCGACCCTTGCTCACATTGTCCCCTCTCTTCTCCTCTATACCCTTCTTCCTGTCTTCGCACCGCTCTTTCTCTCTCTAAAACCTCTATCTGTCGTCACCATTACAGCCTCTTGAAATCAATTTGCTTAAAAGGCAATGAATTTCTTGATGGGAGTTGCCAA...
2802 bp · TkA02G195780|TK1151|CDS
ATGTTTGGTTCTTTGGGGATTTCAGAAATGAATCGTAGGGTTAGAAGAAAGTGTGCTAAAGGAGCCCAAAAATTGGAATTAACAACTAACCATGAAACCGAGGATGCAGATTACATCAAATTAAACGAAGATGGATTTGTGGATTGGACCCGATTACCAAACGACACTGTCCTCCAACTTTTCACCCATTTGAACCATCGAGATCGCGCCAATCTTTCATCAACTTGCAAAAGCTGGAGATCACTCGGATCCTCTTCATG...
Protein
Download Protein FASTA933 aa · TkA02G195780|TK1151|PROTEIN
MFGSLGISEMNRRVRRKCAKGAQKLELTTNHETEDADYIKLNEDGFVDWTRLPNDTVLQLFTHLNHRDRANLSSTCKSWRSLGSSSCLWQSLDLRAHKCDWGIMDSLSSRCSNLQKLRFRGADNADSLINLRAKNLKELSGDYCRKLTDSTLAVIVARHKLLESLQLGPDFCERVSSDAIVAIAFCCPKLRKLRLSGIRDVNGEAINALAAHCPDLTEIGFIDCLKIDEVALGNVVSVRFLSVAGTTNIKWDLVGEKWSK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G195780 |
|---|---|
| TK1151 ID | TkA02G195780 |
| OH-1004 ID | LXL04_025468 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 97.600 |
| Protein coverage (%) | TK1151 13.183 / OH-1004 54.911Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G195780 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:50116846-50124977 (+) | |||||||||
| Description | Similar to FBX5: Protein ARABIDILLO 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002213 defense response to insect Biological Process GO:0006750 glutathione biosynthetic process Biological Process GO:0009408 response to heat Biological Process GO:0009700 indole phytoalexin biosynthetic process Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0009908 flower development Biological Process GO:0010193 response to ozone Biological Process GO:0019761 glucosinolate biosynthetic process Biological Process GO:0042742 defense response to bacterium Biological Process GO:0046686 response to cadmium ion Biological Process GO:0048527 lateral root development Biological Process GO:0050832 defense response to fungus Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G44900 ath:AT3G60350 ath:AT4G23100 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12937F-box-like49-95 aaPF00646F-box49-90 aaPF29594LRR_SKP286-229 aaPF24758LRR_At5g5637092-165 aaPF12799LRR_4106-119 aaPF24758LRR_At5g56370130-232 aaPF00646F-box177-193 aaPF12799LRR_4188-220 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G195780 | PF12937 | F-box-like | 49 | 95 | 1.5e-10 | 41.4 |
| TkA02G195780 | PF00646 | F-box | 49 | 90 | 6.2e-09 | 36.1 |
| TkA02G195780 | PF29594 | LRR_SKP2 | 86 | 229 | 2.2e-09 | 37.7 |
| TkA02G195780 | PF24758 | LRR_At5g56370 | 92 | 165 | 0.0066 | 16.8 |
| TkA02G195780 | PF12799 | LRR_4 | 106 | 119 | 0.00088 | 20.2 |
| TkA02G195780 | PF24758 | LRR_At5g56370 | 130 | 232 | 0.0066 | 16.8 |
| TkA02G195780 | PF00646 | F-box | 177 | 193 | 6.2e-09 | 36.1 |
| TkA02G195780 | PF12799 | LRR_4 | 188 | 220 | 0.00088 | 20.2 |
| TkA02G195780 | PF27094 | DUF8346 | 190 | 249 | 0.2 | 10.8 |
| TkA02G195780 | PF12799 | LRR_4 | 237 | 273 | 0.00088 | 20.2 |
| TkA02G195780 | PF12799 | LRR_4 | 286 | 296 | 0.00088 | 20.2 |
| TkA02G195780 | PF13513 | HEAT_EZ | 377 | 417 | 0.0079 | 17.4 |
| TkA02G195780 | PF13646 | HEAT_2 | 395 | 467 | 0.05 | 14.6 |
| TkA02G195780 | PF00514 | Arm | 396 | 416 | 1.8e-54 | 180.9 |
| TkA02G195780 | PF30701 | ARMC6 | 407 | 642 | 3.2e-09 | 36.6 |
| TkA02G195780 | PF24768 | ARM_ARMC5 | 435 | 532 | 4.8e-25 | 89.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.