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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G195600
Reference: TK1151 Chr: Chr02 Coordinates: 50055654-50058787 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2202 bp · TkA02G195600|TK1151|cDNA

CTAAATTGCAACAGTTCGACAACTCAAAGGTTCATTTCTTTTCTTTTATTTGCACAATATTTGCACAAATAAATTAGTTACAGAAAGCCAGCAAAAAAAACCGATCTTCGTCCGACGTCATCTCTTTCTCCGGCGAACTTCTTTCCGGTATTGTTTGCAAGAACAATTCCGGCAAGTTTTCGATGAATTGAAATTTTTTCTGTGAAAACAAAGGATTAAAAATGAGGGATTCTTCTCCTCCTTCATTTTTCTCTCGATTT...

CDS

Download CDS FASTA

1692 bp · TkA02G195600|TK1151|CDS

ATGAGGGATTCTTCTCCTCCTTCATTTTTCTCTCGATTTTGCACTTCAGCTCTCAGAGCTAAACCACTTAGCAATTCACCGGACGTCGTTCGTATCAATTCCGGCGAGGGTCTAGTTCGCCGTCTCGGTCCTTTTGACCTCATTCTCCTCGGCATTGGCGCTTCAATTGGAGCCGGCATCTTCGTCGTCACCGGCACCGTCGCGCGCGATGCTGGTCCTGGAGTGACAGTCAGCTTTGCACTCGCAGGAGCATCATGTGT...

Protein

Download Protein FASTA

563 aa · TkA02G195600|TK1151|PROTEIN

MRDSSPPSFFSRFCTSALRAKPLSNSPDVVRINSGEGLVRRLGPFDLILLGIGASIGAGIFVVTGTVARDAGPGVTVSFALAGASCVLNALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFTQMMLDYHIGAASIARSLASYVVNVFELIPFLKHNIPDWIGHGGKEIFGFISINLLAPVLLVILTLVLCRGVGESSLVNTIMTTTKIIIVVVVIIVGAFEVDDSNWSPFAPNGFKSVLTGATVAFFAYVGFDAVAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G195600
TK1151 IDTkA02G195600
OH-1004 IDLXL04_022790
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G195600
LocationChr02:50055654-50058787 (-)
DescriptionSimilar to CAT9: Cationic amino acid transporter 9, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g05940 Permease involved in the transport of the cationic amino acids. No verified direct reference in this release
At3g03720 Permease involved in the transport of the cationic amino acids. No verified direct reference in this release
At5g36940 Permease involved in the transport of the cationic neutral or acidic amino acids.
Molecular and functional characterization of a family of amino acid transporters from Arabidopsis.2004 · DOI: 10.1104/pp.104.045278

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022790 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006865 amino acid transport Biological Process
GO:0080144 intracellular amino acid homeostasis Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009705 plant-type vacuole membrane Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0015171 amino acid transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G05940
ath:AT1G58030
ath:AT3G03720
bsu:BSU07340
bsu:BSU09460
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.403
Rank 1 · TkA02G195600 · TK1151
Cell membrane0.299
Rank 2 · TkA02G195600 · TK1151
Cytoplasm0.146
Rank 3 · TkA02G195600 · TK1151
Endoplasmic reticulum0.140
Rank 4 · TkA02G195600 · TK1151
Golgi apparatus0.105
Rank 5 · TkA02G195600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13906AA_permease_C39-65 aa
PF13520AA_permease_242-449 aa
PF03845Spore_permease44-142 aa
PF00324AA_permease47-449 aa
PF04973NMN_transporter103-118 aa
PF03845Spore_permease179-296 aa
PF04973NMN_transporter206-216 aa
PF13906AA_permease_C289-302 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G195600PF13906AA_permease_C39652.5e-1763.4
TkA02G195600PF13520AA_permease_2424491.8e-50172.8
TkA02G195600PF03845Spore_permease441420.004916.5
TkA02G195600PF00324AA_permease474491.3e-34120.4
TkA02G195600PF04973NMN_transporter1031180.001419.3
TkA02G195600PF03845Spore_permease1792960.004916.5
TkA02G195600PF04973NMN_transporter2062160.001419.3
TkA02G195600PF13906AA_permease_C2893022.5e-1763.4
TkA02G195600PF04973NMN_transporter3133290.001419.3
TkA02G195600PF13906AA_permease_C3743892.5e-1763.4
TkA02G195600PF04973NMN_transporter3775410.001419.3
TkA02G195600PF13520AA_permease_24385151.8e-50172.8
TkA02G195600PF00324AA_permease4515231.3e-34120.4
TkA02G195600PF13906AA_permease_C4935422.5e-1763.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5D6Arabidopsis thalianasp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic64.300%Swiss-ProtHigh
Q8W4K3Arabidopsis thalianasp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar32.500%Swiss-ProtMedium
Q8GYB4Arabidopsis thalianasp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial32.800%Swiss-ProtMedium

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