TkA02G193340 | RubberDandelionOmics

Gene overview

TkA02G193340

Reference: TK1151 Chr: Chr02 Coordinates: 49569392-49572500 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1176 bp · TkA02G193340|TK1151|cDNA

ATGGGCTTCATTGCTCCGGAAGGATGGTTGCGGGTCGGGTTGGACTTCGGAGCATGGGTCGCAGATGGACGGGTTTCAGGTCTTCGGATGGGTTGCGGAAGTATGGATGACGGGTGGCTCCGGAACGATGGATGCGGAAGATGGTATCCGAAGTGGGAAAGGAGTCCGAAGCGGGGTCCGATGCAGAGGAACCTTCCGAAGCTGTGTGCTTTTCTTAATGGCGAACTTGAAGAAACAGTCTATGTCGAACAACCACCAGA...

CDS

Download CDS FASTA

1176 bp · TkA02G193340|TK1151|CDS

ATGGGCTTCATTGCTCCGGAAGGATGGTTGCGGGTCGGGTTGGACTTCGGAGCATGGGTCGCAGATGGACGGGTTTCAGGTCTTCGGATGGGTTGCGGAAGTATGGATGACGGGTGGCTCCGGAACGATGGATGCGGAAGATGGTATCCGAAGTGGGAAAGGAGTCCGAAGCGGGGTCCGATGCAGAGGAACCTTCCGAAGCTGTGTGCTTTTCTTAATGGCGAACTTGAAGAAACAGTCTATGTCGAACAACCACCAGA...

Protein

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391 aa · TkA02G193340|TK1151|PROTEIN

MGFIAPEGWLRVGLDFGAWVADGRVSGLRMGCGSMDDGWLRNDGCGRWYPKWERSPKRGPMQRNLPKLCAFLNGELEETVYVEQPPDFVNEKFLDHCYILDKAVYGLKQAPRACSEQKRYFIYQEAFTKKLLIKFGMTVGSKAKVPMAFGTKLKPSLEEPAADQTLYRGMIGSLLYLTSSRPDIMFAVCYCARYQSNPRTSHMTTVKNIFRYLQNTTSLRIWYPANTGFFVQAFTDSDLGGCNLDLKSTSGGCQFLDRKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G193340`
TK1151 ID	TkA02G193340
OH-1004 ID	LXL04_028986
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	75.600
Protein coverage (%)	TK1151 82.609 / OH-1004 17.995 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G193340

Location Chr02:49569392-49572500 (+)

Description Similar to GIP: Copia protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_028986 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0071897 DNA biosynthetic process Biological Process

GO:0042575 DNA polymerase complex Cellular Component

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.646

Rank 1 · TkA02G193340 · TK1151

Nucleus0.261

Rank 2 · TkA02G193340 · TK1151

Mitochondrion0.101

Rank 3 · TkA02G193340 · TK1151

Peroxisome0.075

Rank 4 · TkA02G193340 · TK1151

Endoplasmic reticulum0.045

Rank 5 · TkA02G193340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07727RVT_269-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G193340	`PF07727`	RVT_2	69	133	4.1e-13	50.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZT94`	Arabidopsis thaliana	sp\|Q9ZT94\|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2	36.400%	Swiss-Prot	Medium
`Q94HW2`	Arabidopsis thaliana	sp\|Q94HW2\|POLR1_ARATH Retrovirus-related Pol polyprotein from transposon RE1	35.900%	Swiss-Prot	Medium

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