TkA02G192230 | RubberDandelionOmics

Gene overview

TkA02G192230

Reference: TK1151 Chr: Chr02 Coordinates: 49293801-49297197 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2591 bp · TkA02G192230|TK1151|cDNA

AATACAATGACCCCAACCCCACCGCCCTCTCTCTCCAAAGAAGTCGCCTTTATCCAGTTTTGTTGGTTCAGCTGAATACTCCACTTTTATATTTTACAGTTCTCTCTCACGGACCTTAATAAATGCCCTTTCTTCCCCCTTCCCTTTCACGAGCATTGCCTGAAAAGTGACCCAAAAGTTCTAGGGTTCCGTCACGGACAAAGCTCATTCGAACTCACTTTATTTTCTTCTTCCTTCTTCAAGTCTGATCGCGTTAAATG...

CDS

Download CDS FASTA

1740 bp · TkA02G192230|TK1151|CDS

ATGGAGGACATTGTATTGGTTAAACAAGGATGGAAATGGTTGCTTTCGGAGAGCCATTGTTACACTGTCGCGGCGATGAAGGCTGCTTGTTTCTTCAGGGATAAAATCGGGATTTCTATAGCACGACATTGGCCTAGTGTTTGCCACGGGAGTTCAAGACTGGCTAAGCTATTATGGTACTTCGTGATTCAGTGGAAGGATTGCTTTGTTCGTGGATCTAGATCGCTTTTCAGTTTGGGTACCGCAGCCCTTCTTGTCAT...

Protein

Download Protein FASTA

579 aa · TkA02G192230|TK1151|PROTEIN

MEDIVLVKQGWKWLLSESHCYTVAAMKAACFFRDKIGISIARHWPSVCHGSSRLAKLLWYFVIQWKDCFVRGSRSLFSLGTAALLVIIWSCFLSLTSMSCLFCVLLSMGVAACAIHYLGHTPGIFIVGLFSILILWMYGNFWITGTLFIVGGYLFSRKHARLVVLIATLYALHYVKLQVGWSGILVSINLAFISNDALNCVLQWCDNLSETEKTHFEDQNFPDSFVEDEFRPESEFFTPNNEKAEEVHVDSSNEKAEEVH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G192230`
TK1151 ID	TkA02G192230
OH-1004 ID	LXL04_016098
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G192230`
Location	Chr02:49293801-49297197 (+)
Description	Similar to DNAJC14: DnaJ homolog subfamily C member 14
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_016098` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006260 DNA replication Biological Process GO:0009408 response to heat Biological Process GO:0015031 protein transport Biological Process GO:0042026 protein refolding Biological Process GO:0005737 cytoplasm Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0001664 G protein-coupled receptor binding Molecular Function GO:0005524 ATP binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0031072 heat shock protein binding Molecular Function GO:0050780 dopamine receptor binding Molecular Function
KEGG gene cross-reference	bta:281691 cdf:CD630_24600 hsa:85406 mmu:74330 pdc:CDIF630_02706 rno:114481 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.531

Rank 1 · TkA02G192230 · TK1151

Nucleus0.233

Rank 2 · TkA02G192230 · TK1151

Golgi apparatus0.144

Rank 3 · TkA02G192230 · TK1151

Cytoplasm0.141

Rank 4 · TkA02G192230 · TK1151

Cell membrane0.119

Rank 5 · TkA02G192230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28514DUF8422213-330 aa

PF00226DnaJ316-380 aa

PF14901Jiv90410-507 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G192230	`PF28514`	DUF8422	213	330	0.021	15.4
TkA02G192230	`PF00226`	DnaJ	316	380	5.3e-19	68.8
TkA02G192230	`PF14901`	Jiv90	410	507	1.9e-34	118.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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