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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G189620
Reference: TK1151 Chr: Chr02 Coordinates: 48633501-48642597 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6207 bp · TkA02G189620|TK1151|cDNA

CCACGGTGTTCCTGTTAATCAAAAACAAAAAGCTTTTATGATTGTTGCTAATCAACTCCACCCCAAGCTTCTTCCACTGCCGACTTGGGTTGCCGGTCACCCGTTCCCTTCCTTACCCACTCACATATCTAGTACCCGTTTGCTCTAAATTTCCAATCTCTGTCTTGCTCAGAAAGAAAAAGACCAACCCCTCTATATATATTCATACACATACCATCGAGAAAAACATACAAGTTACACATACCCACAGGTAGAAATGC...

CDS

Download CDS FASTA

5385 bp · TkA02G189620|TK1151|CDS

ATGCATCGCTATAACGCCTGGCTACCACCTCCGGTCGCCGACGCCACCAAGAAAGAGCGAGAATCCTTCGCTCGTGTTGTATCATCCGTGAAAGAGTCGTATACTACGGGTGATCCAGAATCTGTCTACTCCACTCTCAAATGGATATCAGTCATTGACCTATTTGTAAAGGCAAAGAGTGAAGTATCACTGGAAGATGTTTCCATTCTTGTGGAATTTGGTCTGCAAGTGTTTCATTCATCACAAGACAAGCTTTATGC...

Protein

Download Protein FASTA

1794 aa · TkA02G189620|TK1151|PROTEIN

MHRYNAWLPPPVADATKKERESFARVVSSVKESYTTGDPESVYSTLKWISVIDLFVKAKSEVSLEDVSILVEFGLQVFHSSQDKLYAQVRWGNVLVSLLNKFRKKLTLKVDWRPFYDTLIQTHFIRNTGPEGWRIRQRHFETVTSLVRSCRRFFPPNSAHEIWTEFRSLLENPWHNSAFEGSGFVRLFLPTNLDNQNFYSREWINACILQWDSIPNCPFWNSQWAAIIARVIKNYKSNDWEDLVPEIFSRFLNMFEVPVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G189620
TK1151 IDTkA02G189620
OH-1004 IDLXL04_016116
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G189620
LocationChr02:48633501-48642597 (-)
DescriptionSimilar to PA200: Proteasome activator subunit 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g13330 Associated component of the proteasome that specifically recognizes acetylated histones and promotes ATP- and ubiquitin-independent degradation of core histones during DNA damage response. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016116 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process Biological Process
GO:0030317 flagellated sperm motility Biological Process
GO:0035092 sperm DNA condensation Biological Process
GO:0000502 proteasome complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0016504 peptidase activator activity Molecular Function
GO:0070628 proteasome binding Molecular Function
KEGG gene cross-reference
ath:AT3G13330
hsa:23198
mmu:103554
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.567
Rank 1 · TkA02G189620 · TK1151
Cytoplasm0.409
Rank 2 · TkA02G189620 · TK1151
Golgi apparatus0.044
Rank 3 · TkA02G189620 · TK1151
Mitochondrion0.039
Rank 4 · TkA02G189620 · TK1151
Endoplasmic reticulum0.038
Rank 5 · TkA02G189620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16507HEAT_PSME4_mid310-503 aa
PF23271HEAT_GCN1410-424 aa
PF16507HEAT_PSME4_mid514-822 aa
PF24987HEAT_EF3_N604-632 aa
PF12717Cnd1858-907 aa
PF23271HEAT_GCN1964-1004 aa
PF22928INTS1_R4973-1024 aa
PF26715HEAT_GCN1_2975-1023 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G189620PF16507HEAT_PSME4_mid3105033.4e-56191.8
TkA02G189620PF23271HEAT_GCN14104242.4e-0525.2
TkA02G189620PF16507HEAT_PSME4_mid5148223.4e-56191.8
TkA02G189620PF24987HEAT_EF3_N6046320.03214.9
TkA02G189620PF12717Cnd18589070.3311.7
TkA02G189620PF23271HEAT_GCN196410042.4e-0525.2
TkA02G189620PF22928INTS1_R497310240.1313.0
TkA02G189620PF26715HEAT_GCN1_297510230.0002321.9
TkA02G189620PF02985HEAT97910052.1e-1040.5
TkA02G189620PF24987HEAT_EF3_N98010250.03214.9
TkA02G189620PF12348CLASP_N99110250.02315.0
TkA02G189620PF12717Cnd199210240.3311.7
TkA02G189620PF12348CLASP_N105110750.02315.0
TkA02G189620PF13513HEAT_EZ113911800.6311.4
TkA02G189620PF02985HEAT116011852.1e-1040.5
TkA02G189620PF23271HEAT_GCN1116011932.4e-0525.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JC97Arabidopsis thalianasp|F4JC97|PSME4_ARATH Proteasome activator subunit 469.000%Swiss-ProtHigh

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