TkA02G189610 | RubberDandelionOmics

Gene overview

TkA02G189610

Reference: TK1151 Chr: Chr02 Coordinates: 48631472-48634111 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2032 bp · TkA02G189610|TK1151|cDNA

CTGAGTTAAAGTATATTTCTACCGAACAAAATCAAACCCAGTCTTGGTCCCATTACTTCTCAATTTTTGTTATAAAATCGATGGGCATGATGTGCATTACCCCTTTTAATATAATAAGATACCACTATTATTAATGACATATGCTATAATGGTATTAAGATAATAATGGAGTAACCCAAGGTTAAGTTCTTCAAATGATTCCTATTTAATCGTAGTTAATTAGCTAGATTGCTCCAAAAGTAGTTTAATCTGCAGAATGT...

CDS

Download CDS FASTA

1455 bp · TkA02G189610|TK1151|CDS

ATGATCGCTGGAAGAGATGATTATGAAGAGGAGGAGGAAACTCCCATGTTACAGCTATCTTCAATAAAACACACTGCAGTTGAAGAAGAAGTCATCCATGGAGTTCCTGCCACCGGTGATCACATGAACACGATAAGAACAGGAACGTTATGGAGTACAGTCGCTCACATCATCACTGCGGTGATTGGATCTGGTGTACTTTCCCTCGCATGGAGTATGTCACAATTAGGCTGGATAGGAGGGCCTATCGCATTGCTGTG...

Protein

Download Protein FASTA

484 aa · TkA02G189610|TK1151|PROTEIN

MIAGRDDYEEEEETPMLQLSSIKHTAVEEEVIHGVPATGDHMNTIRTGTLWSTVAHIITAVIGSGVLSLAWSMSQLGWIGGPIALLCFALVTYVSSSLLSDCYRSPDPITGTRNRTYTDAVRVILGEKQAHLCGWLQFLNFFGTGVAYVVTTSTCMMAIQKSNCYHKQGHDAACDYSGNLYMFLFGVIQIVMSQIPDFHSMMWVSIVAAVMSFCYSSIGLGLGVAKVIENGRIDGSIKGVPAVNLSVKLWLTFQALGDIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G189610`
TK1151 ID	TkA02G189610
OH-1004 ID	LXL04_016117
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G189610

Location Chr02:48631472-48634111 (+)

Description Similar to AAP2: Amino acid permease 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23810`	Amino acid-proton symporter.	No verified direct reference in this release
`At5g09220`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315 Differential expression of two related amino acid transporters with differing substrate specificity in Arabidopsis thaliana.1993 · DOI: 10.1046/j.1365-313x.1993.04060993.x
`At1g77380`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
`At5g63850`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
`At5g49630`	Amino acid-proton symporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016117 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0006865 amino acid transport Biological Process

GO:0006952 defense response Biological Process

GO:0015800 acidic amino acid transport Biological Process

GO:0015802 basic amino acid transport Biological Process

GO:0015804 neutral amino acid transport Biological Process

GO:0110126 phloem loading Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

GO:0015172 acidic amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G10010

ath:AT1G77380

ath:AT5G09220

ath:AT5G23810

ath:AT5G63850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.500

Rank 1 · TkA02G189610 · TK1151

Lysosome / Vacuole0.265

Rank 2 · TkA02G189610 · TK1151

Endoplasmic reticulum0.125

Rank 3 · TkA02G189610 · TK1151

Cytoplasm0.096

Rank 4 · TkA02G189610 · TK1151

Golgi apparatus0.074

Rank 5 · TkA02G189610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490Aa_trans47-477 aa

PF03222Trp_Tyr_perm49-215 aa

PF03222Trp_Tyr_perm451-469 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G189610	`PF01490`	Aa_trans	47	477	1.9e-106	356.9
TkA02G189610	`PF03222`	Trp_Tyr_perm	49	215	0.00077	19.4
TkA02G189610	`PF03222`	Trp_Tyr_perm	451	469	0.00077	19.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FF99`	Arabidopsis thaliana	sp\|Q9FF99\|AAP7_ARATH Probable amino acid permease 7	57.900%	Swiss-Prot	High
`Q38967`	Arabidopsis thaliana	sp\|Q38967\|AAP2_ARATH Amino acid permease 2	56.800%	Swiss-Prot	High
`Q39134`	Arabidopsis thaliana	sp\|Q39134\|AAP3_ARATH Amino acid permease 3	56.900%	Swiss-Prot	High
`Q9FN04`	Arabidopsis thaliana	sp\|Q9FN04\|AAP4_ARATH Amino acid permease 4	55.700%	Swiss-Prot	High
`P92934`	Arabidopsis thaliana	sp\|P92934\|AAP6_ARATH Amino acid permease 6	52.700%	Swiss-Prot	High

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