TkA02G175810 | RubberDandelionOmics

Gene overview

TkA02G175810

Reference: TK1151 Chr: Chr02 Coordinates: 45311251-45314548 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1763 bp · TkA02G175810|TK1151|cDNA

AAGTCAACACACTCAACCTATGAAATGTCGAAAACACCCCTGTTACTTGCTACCCCTTTTTCTCTCTCCCCCGTAACCTGAAACTGGATCACAATTTTCCGCCATGGATGACCAACATTCTTCTCACTCTCACTCCTCCGCCACCACCACCTCCAATGTCGATGGTGCCGGTCACCGGATACAAGGAGGGGGAGATGTCTTCGGAATCAGATCCACCGGTGCCGGTGGTGGTGCTAAATACAAGCTCATGTCGCCAGCTA...

CDS

Download CDS FASTA

1497 bp · TkA02G175810|TK1151|CDS

ATGGATGACCAACATTCTTCTCACTCTCACTCCTCCGCCACCACCACCTCCAATGTCGATGGTGCCGGTCACCGGATACAAGGAGGGGGAGATGTCTTCGGAATCAGATCCACCGGTGCCGGTGGTGGTGCTAAATACAAGCTCATGTCGCCAGCTAAACTCCCTATCGCAAGGTCTACCTCCATCAACGTCCCTCCCGGTCTCAGCCCTACCTCCTTCCTCGAATCCCCTGTCCTCCTGACTAACATGAAGGCCGAGCC...

Protein

Download Protein FASTA

498 aa · TkA02G175810|TK1151|PROTEIN

MDDQHSSHSHSSATTTSNVDGAGHRIQGGGDVFGIRSTGAGGGAKYKLMSPAKLPIARSTSINVPPGLSPTSFLESPVLLTNMKAEPSPTTGSFFNSSLMQRSINTSAFSLDANCSSRKNLEDNNSGFFEFKPHPPQISAGFQVSAGSNLQRGEPSEPQTQSYPSSSAYMSHEETKHKDVGPATTTQADRSADDGYNWRKYGQKVVKGSEHPRSYYKCTHPNCEVKKIFERSYSGQIKEIVYKGTHDHPKPQPTRRFSAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G175810`
TK1151 ID	TkA02G175810
OH-1004 ID	LXL04_016197
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.000
Protein coverage (%)	TK1151 100.000 / OH-1004 99.802 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G175810

Location Chr02:45311251-45314548 (+)

Description Similar to WRKY20: Probable WRKY transcription factor 20

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26640`	Transcription factor.	No verified direct reference in this release
`At5g07100`	Transcription factor.	Arabidopsis thaliana WRKY25, WRKY26, and WRKY33 coordinate induction of plant thermotolerance.2011 · DOI: 10.1007/s00425-011-1375-2

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q6B6R4`	Transcription repressor (By similarity).	No verified direct reference in this release
`Os01g0826400`	May participate in transcriptional regulation of abscisic acid and gibberellin signaling.	Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells.2005 · DOI: 10.1104/pp.104.054312 A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.2009 · DOI: 10.1007/s11103-009-9463-4

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016197 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0009611 response to wounding Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0009942 longitudinal axis specification Biological Process

KEGG gene cross-reference

ath:AT4G26640

ath:AT5G56270

dosa:Os01g0826400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.963

Rank 1 · TkA02G175810 · TK1151

Cytoplasm0.146

Rank 2 · TkA02G175810 · TK1151

Cell membrane0.017

Rank 3 · TkA02G175810 · TK1151

Mitochondrion0.012

Rank 4 · TkA02G175810 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA02G175810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106WRKY113-124 aa

PF03106WRKY193-249 aa

PF23549Zn_ribbon_GRF_2213-223 aa

PF03106WRKY358-415 aa

PF23549Zn_ribbon_GRF_2374-388 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G175810	`PF03106`	WRKY	113	124	1.3e-49	167.0
TkA02G175810	`PF03106`	WRKY	193	249	1.3e-49	167.0
TkA02G175810	`PF23549`	Zn_ribbon_GRF_2	213	223	0.53	10.8
TkA02G175810	`PF03106`	WRKY	358	415	1.3e-49	167.0
TkA02G175810	`PF23549`	Zn_ribbon_GRF_2	374	388	0.53	10.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93WV0`	Arabidopsis thaliana	sp\|Q93WV0\|WRK20_ARATH Probable WRKY transcription factor 20	50.700%	Swiss-Prot	High
`Q9C5T3`	Arabidopsis thaliana	sp\|Q9C5T3\|WRK26_ARATH Probable WRKY transcription factor 26	40.800%	Swiss-Prot	Medium
`Q6B6R4`	Oryza sativa subsp. indica	sp\|Q6B6R4\|WRK24_ORYSI WRKY transcription factor WRKY24	43.400%	Swiss-Prot	Medium
`Q6IEQ7`	Oryza sativa subsp. japonica	sp\|Q6IEQ7\|WRK24_ORYSJ WRKY transcription factor WRKY24	43.500%	Swiss-Prot	Medium

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