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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G174610
Reference: TK1151 Chr: Chr02 Coordinates: 44872439-44873620 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

496 bp · TkA02G174610|TK1151|cDNA

TTGGGGAATTTTTCGCCCCCTCCCCTGTATCTTAGATTCCACCGCCATGTTTATGCGTTGCCCCAATCTCCTCTCCTTCGGAATACCCTACTTTGTCAATCCATCTCCATCGTTGACCATCGCTGGCACCACGCCCTCTGCAATTGATCGTCGCTGCCATCGCTGCACAAACCCTAAACCACCACCACACTCACCAATCAAGAATCGGTTTACAGGCCTTGTACCAATGCTTCTTACTTACTTGCTCATCTATCAGTGCT...

CDS

Download CDS FASTA

450 bp · TkA02G174610|TK1151|CDS

ATGTTTATGCGTTGCCCCAATCTCCTCTCCTTCGGAATACCCTACTTTGTCAATCCATCTCCATCGTTGACCATCGCTGGCACCACGCCCTCTGCAATTGATCGTCGCTGCCATCGCTGCACAAACCCTAAACCACCACCACACTCACCAATCAAGAATCGGTTTACAGGCCTTGTACCAATGCTTCTTACTTACTTGCTCATCTATCAGTGCTCGAGCAGATTCAACAAAGAAATCACTAAAATCATTGAGAAATTACT...

Protein

Download Protein FASTA

150 aa · TkA02G174610|TK1151|PROTEIN

MFMRCPNLLSFGIPYFVNPSPSLTIAGTTPSAIDRRCHRCTNPKPPPHSPIKNRFTGLVPMLLTYLLIYQCSSRFNKEITKIIEKLLEPRTRTDHQKWTPPSRDYMNNPLTCQTCKIIVKEVTTTLVCDACEKGYHLKCVNYIPKSISRN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G174610
TK1151 IDTkA02G174610
OH-1004 IDLXL04_016210
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 72.115
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G174610
LocationChr02:44872439-44873620 (-)
DescriptionSimilar to At3g20280: PHD finger protein At3g20280
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20280 PHD finger protein At3g20280. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016210 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0005634 nucleus Cellular Component
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G20280
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.483
Rank 1 · TkA02G174610 · TK1151
Cytoplasm0.365
Rank 2 · TkA02G174610 · TK1151
Mitochondrion0.132
Rank 3 · TkA02G174610 · TK1151
Cell membrane0.072
Rank 4 · TkA02G174610 · TK1151
Endoplasmic reticulum0.055
Rank 5 · TkA02G174610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03107C1_226-43 aa
PF00130C1_136-40 aa
PF22908PHD_NSD36-42 aa
PF07191Zn_ribbon_636-41 aa
PF00628PHD37-41 aa
PF27108PHD_Pygo37-41 aa
PF14446Prok-RING_137-40 aa
PF03107C1_268-72 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G174610PF03107C1_226430.01516.3
TkA02G174610PF00130C1_136400.0001921.9
TkA02G174610PF22908PHD_NSD36420.07614.0
TkA02G174610PF07191Zn_ribbon_636410.810.5
TkA02G174610PF00628PHD37415.7e-0523.8
TkA02G174610PF27108PHD_Pygo37410.002718.5
TkA02G174610PF14446Prok-RING_137400.003418.2
TkA02G174610PF03107C1_268720.01516.3
TkA02G174610PF14446Prok-RING_170770.003418.2
TkA02G174610PF27108PHD_Pygo71840.002718.5
TkA02G174610PF05184SapB_178886.77.5
TkA02G174610PF00130C1_11071460.0001921.9
TkA02G174610PF03107C1_21071400.01516.3
TkA02G174610PF27108PHD_Pygo1111410.002718.5
TkA02G174610PF14446Prok-RING_11111430.003418.2
TkA02G174610PF22908PHD_NSD1111460.07614.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5PNS0Arabidopsis thalianasp|Q5PNS0|Y3228_ARATH PHD finger protein At3g2028052.400%Swiss-ProtLow

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