TkA02G167400 | RubberDandelionOmics

Gene overview

TkA02G167400

Reference: TK1151 Chr: Chr02 Coordinates: 42891289-42892393 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

888 bp · TkA02G167400|TK1151|cDNA

ATGCCTCCCAAGGGTTCCTCTCCTCTAGATGATCCTCCATCTGCTTCATCCGATGATGAGGAAACAGAAGACGAACAAGAACAACATCATTTCACACAGAAACCAAGCGTAGAATCATCATCTGAAGAAGACGAATTAGAAGATGAATTGGAAGACGAAATCTTTCACGCTATAAATGCTTTACCAACCCCCGAGAAGACACCCTTGTCAAAACGCCGCCTTTCTTCTGAACCAGATGCGAAGGACAAAAAGAAAATTAA...

CDS

Download CDS FASTA

888 bp · TkA02G167400|TK1151|CDS

ATGCCTCCCAAGGGTTCCTCTCCTCTAGATGATCCTCCATCTGCTTCATCCGATGATGAGGAAACAGAAGACGAACAAGAACAACATCATTTCACACAGAAACCAAGCGTAGAATCATCATCTGAAGAAGACGAATTAGAAGATGAATTGGAAGACGAAATCTTTCACGCTATAAATGCTTTACCAACCCCCGAGAAGACACCCTTGTCAAAACGCCGCCTTTCTTCTGAACCAGATGCGAAGGACAAAAAGAAAATTAA...

Protein

Download Protein FASTA

295 aa · TkA02G167400|TK1151|PROTEIN

MPPKGSSPLDDPPSASSDDEETEDEQEQHHFTQKPSVESSSEEDELEDELEDEIFHAINALPTPEKTPLSKRRLSSEPDAKDKKKIKLPNGDADDGKMSVIKRVWSDDDEILLLHGFMDYQSKKGCSPLSDMDAFYQFTMDSLPGNASKSQLYENIRRLKKKFRVNFEKASINGADPVFPKPHERKLFDVSNKIWGINGCETLSAAAGGSNLKPKVKTPKPKPKIEAKEDDEVAEVIPAKVEDFETLYPYWNAGLNTECS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G167400`
TK1151 ID	TkA02G167400
OH-1004 ID	LXL04_025421
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.300
Protein coverage (%)	TK1151 99.661 / OH-1004 93.130 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G167400

Location Chr02:42891289-42892393 (+)

Description Similar to STK: STOREKEEPER protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00390`	Probable transcription factor At4g00390.	No verified direct reference in this release
`At1g61730`	Probable transcription factor At1g61730.	No verified direct reference in this release
`At1g11510`	Probable transcription factor At1g11510.	No verified direct reference in this release
`At2g01370`	Probable transcription factor At2g01370.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025421 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G11510

ath:AT1G61730

ath:AT2G25650

ath:AT4G00390

sot:102589608

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981

Rank 1 · TkA02G167400 · TK1151

Cytoplasm0.071

Rank 2 · TkA02G167400 · TK1151

Cell membrane0.016

Rank 3 · TkA02G167400 · TK1151

Endoplasmic reticulum0.011

Rank 4 · TkA02G167400 · TK1151

Plastid0.007

Rank 5 · TkA02G167400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04504GeBP-like_DBD102-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G167400	`PF04504`	GeBP-like_DBD	102	196	2.1e-29	102.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23063`	Arabidopsis thaliana	sp\|O23063\|STKLP_ARATH Probable transcription factor At4g00390	38.500%	Swiss-Prot	Low
`Q9SYA9`	Arabidopsis thaliana	sp\|Q9SYA9\|STKLD_ARATH Probable transcription factor At1g61730	37.800%	Swiss-Prot	Low
`C0SUU6`	Arabidopsis thaliana	sp\|C0SUU6\|STKLA_ARATH Probable transcription factor At1g11510	38.600%	Swiss-Prot	Low
`Q9ZU30`	Arabidopsis thaliana	sp\|Q9ZU30\|STKLF_ARATH Probable transcription factor At2g01370	34.700%	Swiss-Prot	Low

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