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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G158640
Reference: TK1151 Chr: Chr02 Coordinates: 40671964-40674270 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1162 bp · TkA02G158640|TK1151|cDNA

ATGAAAGAACCTTCTTCTGATCCAATCTATTCCAATGACGATGACAAGAACTTGGAATGGTTGCTTGAAGTCTTTGGTTCAAAAGTATCCCCTGATGACATGGCATCTGCCTACTACCAAGCAAGGGGTGATATACACAAAGCTAATGAAATACTTTGCAATATGCTTGGAAGCTCTTCCAGCAATGGCACACACATTTCAACTGATGATTTGACTAGTACCCACACATCATCAGTCGGTTCTTCCATGAGTACAACTCA...

CDS

Download CDS FASTA

876 bp · TkA02G158640|TK1151|CDS

ATGAAAGAACCTTCTTCTGATCCAATCTATTCCAATGACGATGACAAGAACTTGGAATGGTTGCTTGAAGTCTTTGGTTCAAAAGTATCCCCTGATGACATGGCATCTGCCTACTACCAAGCAAGGGGTGATATACACAAAGCTAATGAAATACTTTGCAATATGCTTGGAAGCTCTTCCAGCAATGGCACACACATTTCAACTGATGATTTGACTAGTACCCACACATCATCAGTCGGTTCTTCCATGAGTACAACTCA...

Protein

Download Protein FASTA

291 aa · TkA02G158640|TK1151|PROTEIN

MKEPSSDPIYSNDDDKNLEWLLEVFGSKVSPDDMASAYYQARGDIHKANEILCNMLGSSSSNGTHISTDDLTSTHTSSVGSSMSTTHQNSVRSPLPYTLSSNSVIVLADKLPEVLDFSKDLSSLEPAAKMQLKYLAEEMQAISKGLEKVVQELSMAENDGPISESFRKALKDFLCSAEGEARSVASLYSNVGKNVDALIIYFGEDPARCPYEQVVSTLVKFVRMFNQLNEENAKLLEAERKKAEKEASSNEKLKQESQFY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G158640
TK1151 IDTkA02G158640
OH-1004 IDLXL04_036205
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)86.600
Protein coverage (%)TK1151 95.189 / OH-1004 96.947
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G158640
LocationChr02:40671964-40674270 (+)
DescriptionSimilar to FH13: Formin-like protein 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g58160 Formin-like protein 13. No verified direct reference in this release
At2g25050 Formin-like protein 18. No verified direct reference in this release
At3g32400 Formin-like protein 17. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0280200 Formin-like protein 6. No verified direct reference in this release
Os02g0794900 Formin-like protein 7. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036205 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0015630 microtubule cytoskeleton Cellular Component
GO:0090406 pollen tube Cellular Component
GO:0003779 actin binding Molecular Function
GO:0004721 phosphoprotein phosphatase activity Molecular Function
KEGG gene cross-reference
ath:AT2G25050
ath:AT3G32400
ath:AT5G58160
dosa:Os02g0794900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.479
Rank 1 · TkA02G158640 · TK1151
Nucleus0.437
Rank 2 · TkA02G158640 · TK1151
Cell membrane0.108
Rank 3 · TkA02G158640 · TK1151
Golgi apparatus0.083
Rank 4 · TkA02G158640 · TK1151
Endoplasmic reticulum0.059
Rank 5 · TkA02G158640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24767UBA_At5g5872014-56 aa
PF24915Spectrin_SESTD116-91 aa
PF00823PPE34-54 aa
PF25045vWA_Ro6079-153 aa
PF02181FH2105-226 aa
PF24915Spectrin_SESTD1120-152 aa
PF00823PPE127-185 aa
PF10824T7SS_ESX_EspC132-195 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G158640PF24767UBA_At5g5872014562e-1350.7
TkA02G158640PF24915Spectrin_SESTD116910.04514.9
TkA02G158640PF00823PPE34540.05414.2
TkA02G158640PF25045vWA_Ro60791530.06713.8
TkA02G158640PF02181FH21052261.5e-2694.2
TkA02G158640PF24915Spectrin_SESTD11201520.04514.9
TkA02G158640PF00823PPE1271850.05414.2
TkA02G158640PF10824T7SS_ESX_EspC1321950.2112.8
TkA02G158640PF30343Don_juan1361690.0216.2
TkA02G158640PF27242FAM120A1391540.06414.4
TkA02G158640PF27242FAM120A1872610.06414.4
TkA02G158640PF08514STAG2132550.3211.6
TkA02G158640PF24915Spectrin_SESTD12202380.04514.9
TkA02G158640PF10824T7SS_ESX_EspC2262530.2112.8
TkA02G158640PF02181FH22382711.5e-2694.2
TkA02G158640PF30343Don_juan2382570.0216.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVN1Arabidopsis thalianasp|Q9LVN1|FH13_ARATH Formin-like protein 1373.400%Swiss-ProtLow
Q9SK28Arabidopsis thalianasp|Q9SK28|FH18_ARATH Formin-like protein 1868.500%Swiss-ProtMedium
Q9LH02Arabidopsis thalianasp|Q9LH02|FH17_ARATH Formin-like protein 1764.400%Swiss-ProtMedium
Q6ZCX3Oryza sativa subsp. japonicasp|Q6ZCX3|FH6_ORYSJ Formin-like protein 670.400%Swiss-ProtLow
Q6K8Z4Oryza sativa subsp. japonicasp|Q6K8Z4|FH7_ORYSJ Formin-like protein 763.800%Swiss-ProtLow

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