TkA02G153530 | RubberDandelionOmics

Gene overview

TkA02G153530

Reference: TK1151 Chr: Chr02 Coordinates: 39465445-39465813 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

369 bp · TkA02G153530|TK1151|cDNA

ATGGCGGCCTGTGTAGTCTTGTTTGTGCCAATGGCTATGGCGGGATGGCATCTCAGCCGTAATAAAGTCCTCTTCTTCAGCGGCGCTCTTTTCATCAGTCTGGCTGTCTGTATTCACCTCATACCTTATTTCCCTTCCGTTTTCTCCCCTTCTCCGACTGTTCTATTACAACAAGATCCCACCACTCCTTGCATTTCCTTAATAAACGAGGTTAATTTCCACTCCAATTCTGATGGGTTCTCATGGGGTTTCGACAACGA...

CDS

Download CDS FASTA

369 bp · TkA02G153530|TK1151|CDS

ATGGCGGCCTGTGTAGTCTTGTTTGTGCCAATGGCTATGGCGGGATGGCATCTCAGCCGTAATAAAGTCCTCTTCTTCAGCGGCGCTCTTTTCATCAGTCTGGCTGTCTGTATTCACCTCATACCTTATTTCCCTTCCGTTTTCTCCCCTTCTCCGACTGTTCTATTACAACAAGATCCCACCACTCCTTGCATTTCCTTAATAAACGAGGTTAATTTCCACTCCAATTCTGATGGGTTCTCATGGGGTTTCGACAACGA...

Protein

Download Protein FASTA

122 aa · TkA02G153530|TK1151|PROTEIN

MAACVVLFVPMAMAGWHLSRNKVLFFSGALFISLAVCIHLIPYFPSVFSPSPTVLLQQDPTTPCISLINEVNFHSNSDGFSWGFDNDSRSYDCDFQKLSRIDVSDLLNGSWVVVAGDSQARW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G153530`
TK1151 ID	TkA02G153530
OH-1004 ID	LXL04_013956
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 99.180 / OH-1004 35.693 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G153530

Location Chr02:39465445-39465813 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03210`	Component of the plant cell wall polysaccharide acetylation pathway.	The role of the plant-specific ALTERED XYLOGLUCAN9 protein in Arabidopsis cell wall polysaccharide O-acetylation.2015 · DOI: 10.1104/pp.114.256479 Xyloglucan O-acetyltransferases from Arabidopsis thaliana and Populus trichocarpa catalyze acetylation of fucosylated galactose residues on xyloglucan side chains.2018 · DOI: 10.1007/s00425-018-2972-0

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013956 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0045492 xylan biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005796 Golgi lumen Cellular Component

GO:0016407 acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G03210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.323

Rank 1 · TkA02G153530 · TK1151

Golgi apparatus0.253

Rank 2 · TkA02G153530 · TK1151

Lysosome / Vacuole0.177

Rank 3 · TkA02G153530 · TK1151

Nucleus0.121

Rank 4 · TkA02G153530 · TK1151

Cytoplasm0.110

Rank 5 · TkA02G153530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24377DUF75331-42 aa

PF12911OppC_N11-45 aa

PF00689Cation_ATPase_C16-53 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G153530	`PF24377`	DUF7533	1	42	0.043	14.6
TkA02G153530	`PF12911`	OppC_N	11	45	0.089	13.4
TkA02G153530	`PF00689`	Cation_ATPase_C	16	53	0.094	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9N9`	Arabidopsis thaliana	sp\|Q9M9N9\|AXY9_ARATH Protein ALTERED XYLOGLUCAN 9	53.500%	Swiss-Prot	High

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