RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G153380
Reference: TK1151 Chr: Chr02 Coordinates: 39433327-39434189 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

537 bp · TkA02G153380|TK1151|cDNA

TCAATCGGAAGAGAAGGGTTTCTGAGGGTTAAAGCCATCGACGCCGGAGCATCGACTACCAACGCATTCACCACGTTCCATAGCTACTTACCGTCGGGATTGAACAGCGCTTCTGCAATCGTTTCAAACCTCCGTTGTCCTCCCTTACTCTTTAAACTTATCAAGGCGGTCGAAATTGGTGATTTTATAGAGGTTATTGGGCATGAACCAGGATATGAACACGGCTACTTTGAAGGGGAGGTGATTGGGGACTATGATGG...

CDS

Download CDS FASTA

537 bp · TkA02G153380|TK1151|CDS

TCAATCGGAAGAGAAGGGTTTCTGAGGGTTAAAGCCATCGACGCCGGAGCATCGACTACCAACGCATTCACCACGTTCCATAGCTACTTACCGTCGGGATTGAACAGCGCTTCTGCAATCGTTTCAAACCTCCGTTGTCCTCCCTTACTCTTTAAACTTATCAAGGCGGTCGAAATTGGTGATTTTATAGAGGTTATTGGGCATGAACCAGGATATGAACACGGCTACTTTGAAGGGGAGGTGATTGGGGACTATGATGG...

Protein

Download Protein FASTA

178 aa · TkA02G153380|TK1151|PROTEIN

SIGREGFLRVKAIDAGASTTNAFTTFHSYLPSGLNSASAIVSNLRCPPLLFKLIKAVEIGDFIEVIGHEPGYEHGYFEGEVIGDYDGILKIRYEHFVVEKDGPYLVEMVHPDHVRPRPPHVDKDVESFQKGDVVDVLWKDGWWQGIIYDVFDNLNNEMRYEVFYDYMPKYKSMMSVSP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G153380
TK1151 IDTkA02G153380
OH-1004 IDLXL04_023880
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)64.000
Protein coverage (%)TK1151 95.506 / OH-1004 54.592
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G153380
LocationChr02:39433327-39434189 (-)
DescriptionSimilar to DUF6: DUF724 domain-containing protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023880 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0000775 chromosome, centromeric region Cellular Component
GO:0000792 heterochromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0042393 histone binding Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0140566 histone reader activity Molecular Function
KEGG gene cross-reference
ath:AT1G09320
ath:AT1G26540
ath:AT2G47230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.580
Rank 1 · TkA02G153380 · TK1151
Cytoplasm0.405
Rank 2 · TkA02G153380 · TK1151
Endoplasmic reticulum0.079
Rank 3 · TkA02G153380 · TK1151
Cell membrane0.074
Rank 4 · TkA02G153380 · TK1151
Lysosome / Vacuole0.030
Rank 5 · TkA02G153380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07653SH3_257-81 aa
PF14604SH3_958-80 aa
PF00018SH3_159-71 aa
PF05641Agenet60-119 aa
PF26011Beta-barrel_RND_rel84-98 aa
PF26011Beta-barrel_RND_rel122-158 aa
PF07653SH3_2127-146 aa
PF14604SH3_9127-146 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G153380PF07653SH3_257810.001319.1
TkA02G153380PF14604SH3_958800.003617.9
TkA02G153380PF00018SH3_159710.3511.2
TkA02G153380PF05641Agenet601192.7e-1144.5
TkA02G153380PF26011Beta-barrel_RND_rel84980.02915.0
TkA02G153380PF26011Beta-barrel_RND_rel1221580.02915.0
TkA02G153380PF07653SH3_21271460.001319.1
TkA02G153380PF14604SH3_91271460.003617.9
TkA02G153380PF25313BRWD_AD1271720.05314.2
TkA02G153380PF00018SH3_11271460.3511.2
TkA02G153380PF23327Chromo_MORC2_6th1291710.03814.4
TkA02G153380PF05641Agenet1311662.7e-1144.5
TkA02G153380PF18359Tudor_51401650.03914.5
TkA02G153380PF14604SH3_91621760.003617.9
TkA02G153380PF00018SH3_11631700.3511.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser