TkA02G139070 | RubberDandelionOmics

Gene overview

TkA02G139070

Reference: TK1151 Chr: Chr02 Coordinates: 35874826-35882932 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4258 bp · TkA02G139070|TK1151|cDNA

TCAAAATTGAAGTGACTACAAACTACACCCAATCAGCATCAGATCACACCGAGGGCTGCCAAACATGAGATCAGATGAATCCCGACAATGACGGAAAAAGAGCCGATCAAATCGCTATAGTCTAAAATCACACTGAAAGGGTTTTAATTTGACTGTTTACGACCAATTTCAACCATCCCAGTTGACAAACACCCTCTGGATTCACTCATTTCCGTATGATTGCGGCAGATCGATCACCTACATGGCGAATTTCTTAGCTC...

CDS

Download CDS FASTA

3054 bp · TkA02G139070|TK1151|CDS

ATGTTTGAAATGGCTCATCTCCATGAGGACTCGTTAAGGGAATATGATGAACTCGAGCTTTGCTACTTGGAAACAGTTCACATAGCAGGCAAGCAAAGGGACTTTGGAGGAATGGAGCATGGAGATGATCAGGCTGCACTATTAAACCCTGGAAAAAAACCATTGACACAAATTGTTCAAGATGATTCCTTTAGAGAGTTTGAATTTAGACAATATCTTTTTGCTTGTCAAGCCAAGCTATTGTTCAAACTAAACCGTGC...

Protein

Download Protein FASTA

1017 aa · TkA02G139070|TK1151|PROTEIN

MFEMAHLHEDSLREYDELELCYLETVHIAGKQRDFGGMEHGDDQAALLNPGKKPLTQIVQDDSFREFEFRQYLFACQAKLLFKLNRAFEVASRGYSFVISFSKALALHESLLPFCIREVWIITSCLSLVDATASHYSNGLVGPEIEKEYYRVRGELYSLCRAKFMRLAYLLGYGSAIERSPVNSASLSMLPWPKPAVWPSVPSDATSEVLAKEKMIVQVPQRVKHFGIQRKPLPIEPNFLLREANRRRASLSAGNVFEMF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G139070`
TK1151 ID	TkA02G139070
OH-1004 ID	LXL04_016458
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.800
Protein coverage (%)	TK1151 98.328 / OH-1004 80.734 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G139070

Location Chr02:35874826-35882932 (+)

Description Similar to TRS130: Trafficking protein particle complex II-specific subunit 130 homolog

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54440`	Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells.	A putative TRAPPII tethering factor is required for cell plate assembly during cytokinesis in Arabidopsis.2010 · DOI: 10.1111/j.1469-8137.2010.03331.x A specific role for Arabidopsis TRAPPII in post-Golgi trafficking that is crucial for cytokinesis and cell polarity.2011 · DOI: 10.1111/j.1365-313x.2011.04681.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0554400`	Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016458 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0000919 cell plate assembly Biological Process

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0006891 intra-Golgi vesicle-mediated transport Biological Process

GO:0006901 vesicle coating Biological Process

GO:0034498 early endosome to Golgi transport Biological Process

GO:0099022 vesicle tethering Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005769 early endosome Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT5G54440

ddi:DDB_G0273209

ddi:DDB_G0273719

dosa:Os12g0554400

hsa:7109

mmu:216131

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.469

Rank 1 · TkA02G139070 · TK1151

Nucleus0.407

Rank 2 · TkA02G139070 · TK1151

Golgi apparatus0.115

Rank 3 · TkA02G139070 · TK1151

Cell membrane0.072

Rank 4 · TkA02G139070 · TK1151

Endoplasmic reticulum0.072

Rank 5 · TkA02G139070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30303TRAPPC10-Trs130_NTS88-448 aa

PF11817Foie-gras_1313-426 aa

PF24967NTS_TR130315-407 aa

PF12584TRAPPC10_C436-455 aa

PF28381Ig_TRS130456-590 aa

PF30304Ig_TRAPPC10_1st503-559 aa

PF12584TRAPPC10_C911-972 aa

PF12742Gryzun-like925-972 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G139070	`PF30303`	TRAPPC10-Trs130_NTS	88	448	5e-193	641.9
TkA02G139070	`PF11817`	Foie-gras_1	313	426	8.1e-05	23.1
TkA02G139070	`PF24967`	NTS_TR130	315	407	0.0063	16.8
TkA02G139070	`PF12584`	TRAPPC10_C	436	455	1.5e-09	38.6
TkA02G139070	`PF28381`	Ig_TRS130	456	590	3.5e-60	202.4
TkA02G139070	`PF30304`	Ig_TRAPPC10_1st	503	559	0.0023	18.6
TkA02G139070	`PF12584`	TRAPPC10_C	911	972	1.5e-09	38.6
TkA02G139070	`PF12742`	Gryzun-like	925	972	0.067	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K0C4`	Arabidopsis thaliana	sp\|F4K0C4\|TR130_ARATH Trafficking protein particle complex II-specific subunit 130 homolog	67.100%	Swiss-Prot	High
`Q2QNU0`	Oryza sativa subsp. japonica	sp\|Q2QNU0\|TR130_ORYSJ Trafficking protein particle complex II-specific subunit 130 homolog	62.200%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card