TkA02G091190 | RubberDandelionOmics

Gene overview

TkA02G091190

Reference: TK1151 Chr: Chr02 Coordinates: 23722723-23728068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1549 bp · TkA02G091190|TK1151|cDNA

ATACGATCAATCAGCAGCTTTTTGGAGCATTCAAGACGTCAAGTCCTAGTCAAACACCACGTCCCTACGATTACTCACTCAAATAGTCAAATTCACAATTCTACACCAAAAGTTCCAAAACAAACACACCATGATTGCATTCTCTCCTAGCTTCTCTCATCTCACACTCCATACCCAACCACACCATCGTTCTAGAATCCAACATTACAATCAAATCCCTCTTCTTAGATCCAACATTACAATCAAATCCACAATCCCCA...

CDS

Download CDS FASTA

1260 bp · TkA02G091190|TK1151|CDS

ATGATTGCATTCTCTCCTAGCTTCTCTCATCTCACACTCCATACCCAACCACACCATCGTTCTAGAATCCAACATTACAATCAAATCCCTCTTCTTAGATCCAACATTACAATCAAATCCACAATCCCCATTTCTCAAAACCCTAAACAACAACTTTCAAGATCAAGCATTTCCAAGATCCGATCATGTCAAACCAATTCCGGAGAAGGATCACCTCCCGCGACTATTTCTACAGCAAACACCAAATTGGAAAATGTGTT...

Protein

Download Protein FASTA

419 aa · TkA02G091190|TK1151|PROTEIN

MIAFSPSFSHLTLHTQPHHRSRIQHYNQIPLLRSNITIKSTIPISQNPKQQLSRSSISKIRSCQTNSGEGSPPATISTANTKLENVLSTLASLYPVYVTVGGVVACLKPSTFSWFVERAPNSYSFSLGFIMLAMGLTLEFKDLVNLFMERPLSILYGCASQYTIMPFFGFIISKLLGLSTSLSVGLILLSCCPGGTASNVVTLIAQGDVPLSIVMTVCSTLGAVLLTPLLTMVLAGTYVHVDALKLSISTMQVVVAPVLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G091190`
TK1151 ID	TkA02G091190
OH-1004 ID	LXL04_016944
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.100
Protein coverage (%)	TK1151 97.375 / OH-1004 75.281 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G091190

Location Chr02:23722723-23728068 (+)

Description Similar to BASS1: Probable sodium/metabolite cotransporter BASS1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26900`	Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope.	A plastidial sodium-dependent pyruvate transporter.2011 · DOI: 10.1038/nature10250
`At1g78560`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0645200`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release
`Os04g0381100`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016944 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006814 sodium ion transport Biological Process

GO:0006849 plasma membrane pyruvate transport Biological Process

GO:0098717 pantothenate import across plasma membrane Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0015293 symporter activity Molecular Function

GO:0050833 pyruvate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G78560

ath:AT2G26900

bsu:BSU19350

dosa:Os01g0645200

dosa:Os04g0381100

osa:4335634

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.980

Rank 1 · TkA02G091190 · TK1151

Peroxisome0.021

Rank 2 · TkA02G091190 · TK1151

Mitochondrion0.019

Rank 3 · TkA02G091190 · TK1151

Nucleus0.017

Rank 4 · TkA02G091190 · TK1151

Endoplasmic reticulum0.016

Rank 5 · TkA02G091190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13593SBF_like125-388 aa

PF01758SBF126-303 aa

PF01758SBF368-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G091190	`PF13593`	SBF_like	125	388	1.1e-17	65.1
TkA02G091190	`PF01758`	SBF	126	303	4.9e-41	141.2
TkA02G091190	`PF01758`	SBF	368	380	4.9e-41	141.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1EBV7`	Arabidopsis thaliana	sp\|Q1EBV7\|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic	40.700%	Swiss-Prot	Medium
`Q93YR2`	Arabidopsis thaliana	sp\|Q93YR2\|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic	41.900%	Swiss-Prot	Medium
`Q5VRB2`	Oryza sativa subsp. japonica	sp\|Q5VRB2\|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic	40.900%	Swiss-Prot	Medium
`Q7XVB3`	Oryza sativa subsp. japonica	sp\|Q7XVB3\|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic	43.300%	Swiss-Prot	Medium

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