TkA02G086110 | RubberDandelionOmics

Gene overview

TkA02G086110

Reference: TK1151 Chr: Chr02 Coordinates: 22385840-22392089 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2097 bp · TkA02G086110|TK1151|cDNA

CTTCATTGTGGACTCTCCATTGTGCTCTCGGAAAAAAGATTGTATCATTATCTGGTCTATCATAAAAAACAAACCAATAACGTTGAATCTAGAAGGCCAAACAAATGTTTGTCCAGCCACGCCTCCTTATTCAGAAGGCGTCCCGACATCGAGACATCCCGAGGGGCAGTTCGAACACAAGGGGTTCCCAGGGATAATTCACCGCACACAGGGCTTAGTGCGAAGGATTTATCCGAGCATAGTACTACTCGATACCTCCA...

CDS

Download CDS FASTA

597 bp · TkA02G086110|TK1151|CDS

ATGTTTGTGTCAAATAAAACTCCCAAATTTCTTAAAATTAACCCTTATGAAAAGGTTCCTGTTCTTGAGACTCCAGATGGGCCATTGTTTGAGAGTAATGCCATTGCTCGCTATGTTGCCCGTTTGAAGACCGACACTTCTCTTTTCGGATCTTCACTAATTGAATATGGACAAGTCGAGCAGTGGATTGATTTCGCTTCACTAGAAATCGACTCAAACATGGTGAGATGGTTTAGGCCAATATTCGGTTATGATGACTA...

Protein

Download Protein FASTA

198 aa · TkA02G086110|TK1151|PROTEIN

MFVSNKTPKFLKINPYEKVPVLETPDGPLFESNAIARYVARLKTDTSLFGSSLIEYGQVEQWIDFASLEIDSNMVRWFRPIFGYDDYNAPALCSPIFPACISDPACISDLLLESKFGFKGNPASSLYLLILYWLAFPIFSLGSSFRKSASMNNLAQYDEQPQESNIDTAGYASDDVVHLSARSRERKRGVPWTEEDHR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G086110`
TK1151 ID	TkA02G086110
OH-1004 ID	LXL04_016977
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	49.500
Protein coverage (%)	TK1151 100.000 / OH-1004 67.138 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G086110

Location Chr02:22385840-22392089 (+)

Description Similar to Elongation factor 1-gamma

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g57720`	Probably plays a role in anchoring the complex to other cellular components.	No verified direct reference in this release
`At1g09640`	Probably plays a role in anchoring the complex to other cellular components.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0220600`	Probably plays a role in anchoring the complex to other cellular components.	No verified direct reference in this release
`Os02g0220500`	Probably plays a role in anchoring the complex to other cellular components.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010043 response to zinc ion Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0003746 translation elongation factor activity Molecular Function

GO:0004364 glutathione transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G09640

ath:AT1G57720

dosa:Os02g0220600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.385

Rank 1 · TkA02G086110 · TK1151

Nucleus0.246

Rank 2 · TkA02G086110 · TK1151

Mitochondrion0.144

Rank 3 · TkA02G086110 · TK1151

Plastid0.129

Rank 4 · TkA02G086110 · TK1151

Peroxisome0.103

Rank 5 · TkA02G086110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798GST_N5-41 aa

PF13409GST_N_25-41 aa

PF13417GST_N_36-42 aa

PF18485GST_N_517-39 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G086110	`PF02798`	GST_N	5	41	3.2e-11	44.1
TkA02G086110	`PF13409`	GST_N_2	5	41	1.6e-07	32.5
TkA02G086110	`PF13417`	GST_N_3	6	42	1.5e-06	29.1
TkA02G086110	`PF18485`	GST_N_5	17	39	0.11	13.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FVT2`	Arabidopsis thaliana	sp\|Q9FVT2\|EF1G2_ARATH Probable elongation factor 1-gamma 2	68.100%	Swiss-Prot	Low
`O04487`	Arabidopsis thaliana	sp\|O04487\|EF1G1_ARATH Probable elongation factor 1-gamma 1	68.100%	Swiss-Prot	Low
`Q9ZRI7`	Oryza sativa subsp. japonica	sp\|Q9ZRI7\|EF1G1_ORYSJ Elongation factor 1-gamma 1	50.400%	Swiss-Prot	Medium
`Q6YW46`	Oryza sativa subsp. japonica	sp\|Q6YW46\|EF1G2_ORYSJ Elongation factor 1-gamma 2	50.400%	Swiss-Prot	Medium

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