TkA02G077030 | RubberDandelionOmics

Gene overview

TkA02G077030

Reference: TK1151 Chr: Chr02 Coordinates: 19990580-20000704 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2922 bp · TkA02G077030|TK1151|cDNA

CGTCGTCGAGCAACGACAACCATTCAAAATTCTTATTTCAGAAATTCTACTTTATTTTTTCCTCATCAACAACAATTATGTCTGCAGCCACCGGAGATCAACCCTCCACCTCCTTTTCCACAGATGGTTCACAACCATGTCGCCGGTTTGAATTTACCGAGATTCTCTCAGCGACCGACAACTTTAACGAATCTTTAGTAGTTGGGCGTGGAGGATTTGGAAATGTTTACAAAGGTGAAATTCTAAATGGATCCACTCTC...

CDS

Download CDS FASTA

2160 bp · TkA02G077030|TK1151|CDS

ATGTCGGCAGCAACCGGAGATCAACCCTCCACCTCCTTTTCCACATATGGTTCACAACCATGTCGCCGGTTTGAATTTACCGAGATTCTCTCAGCGACCGACAACTTTAACGAATCATTAGTAGTTGGGCGTGGAGGATTTGGAAAAGTTTACAAAGGTGAAATTCTCAATGGATCAACTCTTGTTCTTGCCGCCATCAAGCGGTTGGATTCCATGTCCAATCAAGGGGAAGAAGAGTTTCGGGCAGAAGTTGAGATGCT...

Protein

Download Protein FASTA

719 aa · TkA02G077030|TK1151|PROTEIN

MSAATGDQPSTSFSTYGSQPCRRFEFTEILSATDNFNESLVVGRGGFGKVYKGEILNGSTLVLAAIKRLDSMSNQGEEEFRAEVEMLSKLRHSHLVSLFGYCNYETEKILIYEYMPNGTLEDHLHKLGTHLSWLQRLKICIGAARGLDYLHTGTGIETGVIHRDVKTSNILLHESWAAKISDFGLSRIAPTNQQSTYVNTLVKGTFGYFDPNYFATGRLTRKSDVYAFGVVLFEVLCRKRAVDKSLDDEQWGLVSWAQDS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G077030`
TK1151 ID	TkA02G077030
OH-1004 ID	LXL04_017067
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	89.500
Protein coverage (%)	TK1151 98.887 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G077030

Location Chr02:19990580-20000704 (-)

Description Similar to BAK1: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33430`	Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates.	The BRI1-associated kinase 1, BAK1, has a brassinolide-independent role in plant cell-death control.2007 · DOI: 10.1016/j.cub.2007.05.046 BAK1 and BKK1 regulate brassinosteroid-dependent growth and brassinosteroid-independent cell-death pathways.2007 · DOI: 10.1016/j.cub.2007.05.036 Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216 Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.2009 · DOI: 10.1073/pnas.0810249106 Phosphorylation of receptor-like cytoplasmic kinases by bacterial flagellin.2010 · DOI: 10.4161/psb.11500 The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens.2011 · DOI: 10.1105/tpc.111.084301 Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.2014 · DOI: 10.1016/j.jsb.2014.02.005 Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1.2015 · DOI: 10.1105/tpc.15.00306 An RLP23-SOBIR1-BAK1 complex mediates NLP-triggered immunity.2015 · DOI: 10.1038/nplants.2015.140 The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana.2019 · DOI: 10.1093/jxb/ery454 The Arabidopsis MIK2 receptor elicits immunity by sensing a conserved signature from phytocytokines and microbes.2021 · DOI: 10.1038/s41467-021-25580-w
`At2g13790`	Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates.	BAK1 and BKK1 regulate brassinosteroid-dependent growth and brassinosteroid-independent cell-death pathways.2007 · DOI: 10.1016/j.cub.2007.05.036 Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216 The Arabidopsis MIK2 receptor elicits immunity by sensing a conserved signature from phytocytokines and microbes.2021 · DOI: 10.1038/s41467-021-25580-w
`At1g34210`	Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways.	Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8BB68`	LRR receptor kinase involved in defense response.	No verified direct reference in this release
`Os08g0174700`	LRR receptor kinase involved in defense response.	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield.2009 · DOI: 10.1111/j.1467-7652.2009.00444.x A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice.2011 · DOI: 10.1007/s10059-011-0178-4

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017067 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0090351 seedling development Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G13790

ath:AT4G33430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.688

Rank 1 · TkA02G077030 · TK1151

Cytoplasm0.259

Rank 2 · TkA02G077030 · TK1151

Nucleus0.202

Rank 3 · TkA02G077030 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkA02G077030 · TK1151

Golgi apparatus0.031

Rank 5 · TkA02G077030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase40-308 aa

PF07714PK_Tyr_Ser-Thr41-310 aa

PF01636APH77-138 aa

PF03109ABC1103-203 aa

PF01636APH157-188 aa

PF17667Pkinase_fungal157-175 aa

PF06293Kdo158-176 aa

PF12330Haspin_kinase162-197 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G077030	`PF00069`	Pkinase	40	308	7e-81	272.2
TkA02G077030	`PF07714`	PK_Tyr_Ser-Thr	41	310	5.1e-88	295.4
TkA02G077030	`PF01636`	APH	77	138	0.015	15.8
TkA02G077030	`PF03109`	ABC1	103	203	0.00013	21.9
TkA02G077030	`PF01636`	APH	157	188	0.015	15.8
TkA02G077030	`PF17667`	Pkinase_fungal	157	175	0.14	11.5
TkA02G077030	`PF06293`	Kdo	158	176	0.21	11.7
TkA02G077030	`PF12330`	Haspin_kinase	162	197	0.061	13.1
TkA02G077030	`PF00069`	Pkinase	399	667	7e-81	272.2
TkA02G077030	`PF07714`	PK_Tyr_Ser-Thr	400	669	5.1e-88	295.4
TkA02G077030	`PF03109`	ABC1	403	427	0.00013	21.9
TkA02G077030	`PF06293`	Kdo	493	535	0.21	11.7
TkA02G077030	`PF01636`	APH	507	533	0.015	15.8
TkA02G077030	`PF17667`	Pkinase_fungal	515	571	0.14	11.5
TkA02G077030	`PF03109`	ABC1	517	548	0.00013	21.9
TkA02G077030	`PF12330`	Haspin_kinase	520	552	0.061	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94F62`	Arabidopsis thaliana	sp\|Q94F62\|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	73.800%	Swiss-Prot	Medium
`Q9SKG5`	Arabidopsis thaliana	sp\|Q9SKG5\|SERK4_ARATH Somatic embryogenesis receptor kinase 4	72.900%	Swiss-Prot	Low
`Q9XIC7`	Arabidopsis thaliana	sp\|Q9XIC7\|SERK2_ARATH Somatic embryogenesis receptor kinase 2	70.400%	Swiss-Prot	Medium
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	53.700%	Swiss-Prot	Medium
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	53.100%	Swiss-Prot	Medium
`B8BB68`	Oryza sativa subsp. indica	sp\|B8BB68\|BAK1_ORYSI LRR receptor kinase BAK1	71.000%	Swiss-Prot	Medium
`Q6Z4U4`	Oryza sativa subsp. japonica	sp\|Q6Z4U4\|BAK1_ORYSJ LRR receptor kinase BAK1	71.000%	Swiss-Prot	Medium

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