TkA02G064620 | RubberDandelionOmics

Gene overview

TkA02G064620

Reference: TK1151 Chr: Chr02 Coordinates: 16775380-16777110 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1239 bp · TkA02G064620|TK1151|cDNA

ATGCTTGAATCAGCCAATCGCTCAAATGTTTCATTTGTCGCGGTAGAGTTTGATACAGTTTATAACCCTCACTGGGATCCTACAAATTATACTCACGTAGGTATAAACATCAACAATCTTTCTTCTGTTATATATGCGGCATACCCGTTGCTCAACGACATATTAATTAGGCAAGAGTTTCAAGTTTTGATCAAGTATGATTCAGTTTCCAAAAATCTTAGTGTTTCCTACACCACGTCTGATATTTATGAAATGCAAGC...

CDS

Download CDS FASTA

1239 bp · TkA02G064620|TK1151|CDS

ATGCTTGAATCAGCCAATCGCTCAAATGTTTCATTTGTCGCGGTAGAGTTTGATACAGTTTATAACCCTCACTGGGATCCTACAAATTATACTCACGTAGGTATAAACATCAACAATCTTTCTTCTGTTATATATGCGGCATACCCGTTGCTCAACGACATATTAATTAGGCAAGAGTTTCAAGTTTTGATCAAGTATGATTCAGTTTCCAAAAATCTTAGTGTTTCCTACACCACGTCTGATATTTATGAAATGCAAGC...

Protein

Download Protein FASTA

412 aa · TkA02G064620|TK1151|PROTEIN

MLESANRSNVSFVAVEFDTVYNPHWDPTNYTHVGININNLSSVIYAAYPLLNDILIRQEFQVLIKYDSVSKNLSVSYTTSDIYEMQALIAGGCLIFALLVIVTIVCWKKWKNKGDEMEEPGSGVEMNTEFEMSTGARRFSYRVLARSTGGFAGKEKLGEGGFGEVYKGYKIAHGLASALLYLHEEWEQCVLHRDIKSSNVMLDSNFNAKLGDFGLAKLVDHEKGSQTTLLAGTLGYLAPECVVTGKATRKSDVFSFGVVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G064620`
TK1151 ID	TkA02G064620
OH-1004 ID	LXL04_017238
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.400
Protein coverage (%)	TK1151 99.515 / OH-1004 81.766 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G064620

Location Chr02:16775380-16777110 (-)

Description Similar to LECRK91: L-type lectin-domain containing receptor kinase IX.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10530`	Promotes hydrogen peroxide H(2)O(2) production and cell death.	No verified direct reference in this release
`At5g65600`	Promotes hydrogen peroxide H(2)O(2) production and cell death.	No verified direct reference in this release
`At5g55830`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At5g03140`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At3g53380`	L-type lectin-domain containing receptor kinase VIII.1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017238 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G55550

ath:AT5G06740

ath:AT5G10530

ath:AT5G55830

ath:AT5G65600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.784

Rank 1 · TkA02G064620 · TK1151

Endoplasmic reticulum0.116

Rank 2 · TkA02G064620 · TK1151

Cytoplasm0.102

Rank 3 · TkA02G064620 · TK1151

Nucleus0.061

Rank 4 · TkA02G064620 · TK1151

Lysosome / Vacuole0.050

Rank 5 · TkA02G064620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139Lectin_legB6-79 aa

PF16101PRIMA172-134 aa

PF27913EVI2B86-113 aa

PF00069Pkinase154-172 aa

PF07714PK_Tyr_Ser-Thr154-169 aa

PF00069Pkinase170-337 aa

PF07714PK_Tyr_Ser-Thr170-338 aa

PF01636APH178-205 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G064620	`PF00139`	Lectin_legB	6	79	9.9e-16	58.7
TkA02G064620	`PF16101`	PRIMA1	72	134	0.021	15.3
TkA02G064620	`PF27913`	EVI2B	86	113	0.14	12.5
TkA02G064620	`PF00069`	Pkinase	154	172	4.1e-29	102.5
TkA02G064620	`PF07714`	PK_Tyr_Ser-Thr	154	169	1.2e-25	91.0
TkA02G064620	`PF00069`	Pkinase	170	337	4.1e-29	102.5
TkA02G064620	`PF07714`	PK_Tyr_Ser-Thr	170	338	1.2e-25	91.0
TkA02G064620	`PF01636`	APH	178	205	0.15	12.5
TkA02G064620	`PF17667`	Pkinase_fungal	188	256	0.0055	16.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXA5`	Arabidopsis thaliana	sp\|Q9LXA5\|LRK91_ARATH L-type lectin-domain containing receptor kinase IX.1	37.700%	Swiss-Prot	Medium
`Q9LSL5`	Arabidopsis thaliana	sp\|Q9LSL5\|LRK92_ARATH L-type lectin-domain containing receptor kinase IX.2	55.300%	Swiss-Prot	Low
`Q9FHG4`	Arabidopsis thaliana	sp\|Q9FHG4\|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.7	53.700%	Swiss-Prot	Low
`Q9LYX1`	Arabidopsis thaliana	sp\|Q9LYX1\|LRK82_ARATH L-type lectin-domain containing receptor kinase VIII.2	52.300%	Swiss-Prot	Low
`Q9LFH9`	Arabidopsis thaliana	sp\|Q9LFH9\|LRK81_ARATH L-type lectin-domain containing receptor kinase VIII.1	50.300%	Swiss-Prot	Low

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