TkA02G060340 | RubberDandelionOmics

Gene overview

TkA02G060340

Reference: TK1151 Chr: Chr02 Coordinates: 15709840-15711765 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

950 bp · TkA02G060340|TK1151|cDNA

GTGGGACATCATAATCTTTTGTGACACAAAAAAGAGCGAGCCATGAACAACTTCAAATATGTTTTCCTTTGTGGAATATTTATATGTTATTCATTAAAATCTTCATTTGCTTCAATTGTTTCAACCGGCGATTTCAATAAAGATTTTTTTGTTACTTGGTCCCCTAGCCATGTCAATACTTCTACCGATGGTCAATCAACAAGCTTGAAGCTCGATCAAGAATCAGGTTCAGCTATTGCGTCTAACGACATGTTTTTGTT...

CDS

Download CDS FASTA

882 bp · TkA02G060340|TK1151|CDS

ATGAACAACTTCAAATATGTTTTCCTTTGTGGAATATTTATATGTTATTCATTAAAATCTTCATTTGCTTCAATTGTTTCAACCGGCGATTTCAATAAAGATTTTTTTGTTACTTGGTCCCCTAGCCATGTCAATACTTCTACCGATGGTCAATCAACAAGCTTGAAGCTCGATCAAGAATCAGGTTCAGCTATTGCGTCTAACGACATGTTTTTGTTTGGTCAATTTGACATGCGAATCAAGTTGGTCCCCGGTCACTC...

Protein

Download Protein FASTA

293 aa · TkA02G060340|TK1151|PROTEIN

MNNFKYVFLCGIFICYSLKSSFASIVSTGDFNKDFFVTWSPSHVNTSTDGQSTSLKLDQESGSAIASNDMFLFGQFDMRIKLVPGHSAGTVLAFYLTSDQPNRDEIDFEFLGNVLDQPYILQTNIFADGFDNREERIRLWFDPTKDFHTYSILWNLHQIVFMVDYVPIITYRNHADKGVAYPRWQPMSMKMSLWDGSSWATNGGKDKIDWSKGPFIASFANHTIDACIWKGNARFCRANSSGNWWNKEELSSLTWKQRRF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G060340`
TK1151 ID	TkA02G060340
OH-1004 ID	LXL04_017284
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G060340

Location Chr02:15709840-15711765 (+)

Description Similar to XTH10: Probable xyloglucan endotransglucosylase/hydrolase protein 10

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g14620`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At1g11545`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At5g13870`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017284 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function

GO:0016762 xyloglucan:xyloglucosyl transferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G14620

ath:AT4G37800

ath:AT5G65730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.340

Rank 1 · TkA02G060340 · TK1151

Extracellular0.293

Rank 2 · TkA02G060340 · TK1151

Cytoplasm0.163

Rank 3 · TkA02G060340 · TK1151

Endoplasmic reticulum0.146

Rank 4 · TkA02G060340 · TK1151

Golgi apparatus0.135

Rank 5 · TkA02G060340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722Glyco_hydro_1632-212 aa

PF06955XET_C240-288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G060340	`PF00722`	Glyco_hydro_16	32	212	6.6e-61	205.5
TkA02G060340	`PF06955`	XET_C	240	288	1.7e-16	60.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVK1`	Arabidopsis thaliana	sp\|Q9ZVK1\|XTH10_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 10	70.700%	Swiss-Prot	High
`Q8L9A9`	Arabidopsis thaliana	sp\|Q8L9A9\|XTH8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 8	45.100%	Swiss-Prot	Medium
`Q9XIW1`	Arabidopsis thaliana	sp\|Q9XIW1\|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5	48.100%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card