TkA02G048650 | RubberDandelionOmics

Gene overview

TkA02G048650

Reference: TK1151 Chr: Chr02 Coordinates: 12655084-12657813 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2005 bp · TkA02G048650|TK1151|cDNA

CATAAGTCTGGACCAAGATCTCTCGTTTTGCGCCTAGATAATTTACATTTATCTCGCCGTATATTCTCCCAAAGCAAAGACATGGGAGAAGAGATTGCGTCTCATGCTCTCCAAAAAGTCAAACGAACAATGTCCCCATAAACTTTGGGATTGATTCTTCTCGAAATAGGGAATATCTTTGACTCATCTCTAATCCCATTTCTTACATCAACCCCTCAATCAAGACCATGTTCGTAGCTTAGTACGCCAAACAAAGATCG...

CDS

Download CDS FASTA

1506 bp · TkA02G048650|TK1151|CDS

ATGGGTGTGGAGGGAAAGAAACAGACGATATTGAGCAATGATCAGAGCACTACAGATAAGAAATCAAACCCAAAGCTCACTTTACTACCTCTAATCGCCCTAATTTTCTACGAAGTCTCCGGCGGTCCATTTGGGGTAGAAGATTCAGTCAAATCCGGAGGCGGAGCTCTACTTTCGTTACTAGGGTTCTTAATTTTCCCCATTTTCTGGAGCATCCCGGAAGCATTAATCACAGCGGAGCTCGCCACAAGCTTCCCCGA...

Protein

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501 aa · TkA02G048650|TK1151|PROTEIN

MGVEGKKQTILSNDQSTTDKKSNPKLTLLPLIALIFYEVSGGPFGVEDSVKSGGGALLSLLGFLIFPIFWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFLDYLKQSLPIFDELYARIPTLLAITILLTYLNYRGLHIVGFSAVLLASFSLLPFLVMGVLSIPKIRPRRWVTLDLKKVQWRGYFNNMFWNLNYWDKASTLAGEVEDPSRTFPKALYGAVIVVVCSYLIPLLAGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G048650`
TK1151 ID	TkA02G048650
OH-1004 ID	LXL04_017348
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.800
Protein coverage (%)	TK1151 99.002 / OH-1004 98.218 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G048650

Location Chr02:12655084-12657813 (-)

Description Similar to At3g19553: Probable polyamine transporter At3g19553

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19553`	Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release
`At1g31830`	Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release
`At5g05630`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	Natural variation in a polyamine transporter determines paraquat tolerance in Arabidopsis.2012 · DOI: 10.1073/pnas.1121406109

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2X8M8`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	No verified direct reference in this release
`Os02g0700500`	Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.	Functional analysis of OsPUT1, a rice polyamine uptake transporter.2012 · DOI: 10.1007/s00425-011-1486-9

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017348 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0015839 cadaverine transport Biological Process

GO:0015846 polyamine transport Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015203 polyamine transmembrane transporter activity Molecular Function

GO:0015293 symporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G31830

ath:AT3G19553

ath:AT5G05630

dosa:Os02g0700500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.390

Rank 1 · TkA02G048650 · TK1151

Lysosome / Vacuole0.335

Rank 2 · TkA02G048650 · TK1151

Endoplasmic reticulum0.130

Rank 3 · TkA02G048650 · TK1151

Cytoplasm0.112

Rank 4 · TkA02G048650 · TK1151

Golgi apparatus0.093

Rank 5 · TkA02G048650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13520AA_permease_227-412 aa

PF00324AA_permease52-419 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G048650	`PF13520`	AA_permease_2	27	412	1.9e-31	110.1
TkA02G048650	`PF00324`	AA_permease	52	419	7.7e-15	55.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LH39`	Arabidopsis thaliana	sp\|Q9LH39\|PHSD_ARATH Probable polyamine transporter At3g19553	77.100%	Swiss-Prot	High
`Q9C6S5`	Arabidopsis thaliana	sp\|Q9C6S5\|PHSB_ARATH Probable polyamine transporter At1g31830	57.500%	Swiss-Prot	High
`Q9FFL1`	Arabidopsis thaliana	sp\|Q9FFL1\|RMV1_ARATH Polyamine transporter RMV1	56.600%	Swiss-Prot	High
`A2X8M8`	Oryza sativa subsp. indica	sp\|A2X8M8\|PUT1_ORYSI Polyamine transporter PUT1	57.300%	Swiss-Prot	High
`Q6Z8D0`	Oryza sativa subsp. japonica	sp\|Q6Z8D0\|PUT1_ORYSJ Polyamine transporter PUT1	57.300%	Swiss-Prot	High

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