TkA02G043690 | RubberDandelionOmics

Gene overview

TkA02G043690

Reference: TK1151 Chr: Chr02 Coordinates: 11113673-11116677 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1707 bp · TkA02G043690|TK1151|cDNA

AAATACGCGACGGGTCGAGTGTCAATACTCAAAATCCGGCCTTGTGGAAAACGGAATCTGAGTTCTTTCATCTCGTTCCATTTCTCCACCTCTCGATAATTAATCTAACCCTCTAGATTCCTTTTGTTCCCTTTTTTAATCTTTTTCTACAAGATTTCACCATTTTCACACAGAATCATAGCTACAGAACAAGTATATATATAGATCACCATTCACCAGTCCCCCTGCTTATCTCTGTGTTTCATTTGATCTTCAAAATC...

CDS

Download CDS FASTA

924 bp · TkA02G043690|TK1151|CDS

ATGCTTCTCATGACCGATGCAATTGTTACTCTAAAAGAGGAATTAACGACGTTCAAGAAATCAGCAAATCAGCCAACACTCGAAGAATTTATACCACTTAACAAGACCTGCGATGAAGATCCAAAAGTTGAAACCGACAATGGCGACAAGAAGAATTGGTTAAGCTCCACACATCTATGGAACACAAATGAGAACGATTCAGACACAAATCAAAACCATATCCCAATACAAAGTCCAGTCAAGCAAGTAATCCAAAAGAA...

Protein

Download Protein FASTA

307 aa · TkA02G043690|TK1151|PROTEIN

MLLMTDAIVTLKEELTTFKKSANQPTLEEFIPLNKTCDEDPKVETDNGDKKNWLSSTHLWNTNENDSDTNQNHIPIQSPVKQVIQKKFEEEQEGMIDNGPFIPFKRYSVFTKNEDKMESPIPGLSLITPGLKIPMSGNDFLTKTSAIQTNVKIGTTQNQPPHPETSRKQRRCWSTELHRRFLNALQQLGGPKVATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRLPLNSSNVPLWSQDQFLESSKYKDCHQSGSPDGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G043690`
TK1151 ID	TkA02G043690
OH-1004 ID	LXL04_017441
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 82.086 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G043690

Location Chr02:11113673-11116677 (+)

Description Similar to HHO5: Transcription factor HHO5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68670`	Probable transcription factor involved in phosphate homeostasis.	Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.2016 · DOI: 10.1093/pcp/pcw063
`At2g03500`	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature.	No verified direct reference in this release
`At1g25550`	Probable transcription factor involved in phosphate signaling in roots.	No verified direct reference in this release
`At1g13300`	Transcription factor involved in nitrate and phosphate signaling in roots.	Overexpressing HRS1 confers hypersensitivity to low phosphate-elicited inhibition of primary root growth in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1744-7909.2009.00819.x HRS1 acts as a negative regulator of abscisic acid signaling to promote timely germination of Arabidopsis seeds.2012 · DOI: 10.1371/journal.pone.0035764 AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.2015 · DOI: 10.1038/ncomms7274

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0176700`	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017441 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009266 response to temperature stimulus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0034244 negative regulation of transcription elongation by RNA polymerase II Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048449 floral organ formation Biological Process

GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process

KEGG gene cross-reference

ath:AT1G25550

ath:AT1G68670

ath:AT2G03500

ath:AT4G37180

dosa:Os02g0325600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.940

Rank 1 · TkA02G043690 · TK1151

Cytoplasm0.153

Rank 2 · TkA02G043690 · TK1151

Mitochondrion0.023

Rank 3 · TkA02G043690 · TK1151

Cell membrane0.021

Rank 4 · TkA02G043690 · TK1151

Endoplasmic reticulum0.009

Rank 5 · TkA02G043690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding170-221 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G043690	`PF00249`	Myb_DNA-binding	170	221	2e-06	28.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZS3`	Arabidopsis thaliana	sp\|Q8VZS3\|HHO2_ARATH Transcription factor HHO2	40.100%	Swiss-Prot	Medium
`Q9ZQ85`	Arabidopsis thaliana	sp\|Q9ZQ85\|EFM_ARATH Myb family transcription factor EFM	37.400%	Swiss-Prot	Medium
`Q9FPE8`	Arabidopsis thaliana	sp\|Q9FPE8\|HHO3_ARATH Transcription factor HHO3	45.900%	Swiss-Prot	Medium
`Q9FX67`	Arabidopsis thaliana	sp\|Q9FX67\|HRS1_ARATH Transcription factor HRS1	90.000%	Swiss-Prot	Low
`Q5VRW2`	Oryza sativa subsp. japonica	sp\|Q5VRW2\|NOH1_ORYSJ Transcription factor NIGTH1	39.100%	Swiss-Prot	Medium

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