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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G023120
Reference: TK1151 Chr: Chr02 Coordinates: 5462162-5464957 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1648 bp · TkA02G023120|TK1151|cDNA

AAATTTAGAAGAAAATAAAAATTCTTGTTCGAGATCGAGGAGATCTAAAACATTAAAAATCAAGAAATTTGTAGAGAGAGAAAGTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGAAGTTGAGGGAAATTGCCGAAATGGAAAAGAGGAACGGTGGCGTCGCTATCGCTTCTTCAAATTCTTCTGTTCATACCATTGAAGAAGCTGTAAGGCGATTGAGAATCCAAACAGATGGGAAAGACGACGGAACTGCC...

CDS

Download CDS FASTA

1188 bp · TkA02G023120|TK1151|CDS

ATGCCGGATAATCGGCGTGTTCAGAGGAACGGTGGCGTCGCTATCGCTTCTTCAAATTCTTCTGTTCATACCATTGAAGAAGCTGTAAGGCGATTGAGAATCCAAACAGATGGGAAAGACGACGGAACTGCCATGGCCGGTTCGATAGCTTTCCCAGATCGCCCAGGTGAACCGGATTGTATATTCTATTTAAGAACCGGCATGTGTGGATATGGAAACACTTGTAGGTTTAATCATCCAACCCACATTGGGCAGCTCAA...

Protein

Download Protein FASTA

395 aa · TkA02G023120|TK1151|PROTEIN

MPDNRRVQRNGGVAIASSNSSVHTIEEAVRRLRIQTDGKDDGTAMAGSIAFPDRPGEPDCIFYLRTGMCGYGNTCRFNHPTHIGQLNQHGGGELPERIGEPDCVYFLKTGTCKYGSTCKYNHPRDRRGAGPVVLNMVGLPMRQEEKACAHYIRTGSCKFGVACKFHHPQPSLDGSNTAQLQYTSPPQPPLINGVSPWSLPRATYVSDPLLQTPQTYLPIVQGIGPTQGWSTYMGSLSPVTSGSIYEGGYSLTSSNSNLPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G023120
TK1151 IDTkA02G023120
OH-1004 IDLXL04_017584
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G023120
LocationChr02:5462162-5464957 (-)
DescriptionSimilar to At1g04990: Zinc finger CCCH domain-containing protein 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g32930 Zinc finger CCCH domain-containing protein 26. No verified direct reference in this release
At1g04990 Possesses RNA-binding and ribonuclease activities in vitro. No verified direct reference in this release
At3g02830 Zinc finger CCCH domain-containing protein 33. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0405100 Zinc finger CCCH domain-containing protein 66. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017584 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006970 response to osmotic stress Biological Process
GO:0017148 negative regulation of translation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004518 nuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0010313 phytochrome binding Molecular Function
GO:0016787 hydrolase activity Molecular Function
GO:0048027 mRNA 5'-UTR binding Molecular Function
KEGG gene cross-reference
ath:AT1G04990
ath:AT2G32930
ath:AT3G02830
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.826
Rank 1 · TkA02G023120 · TK1151
Cytoplasm0.221
Rank 2 · TkA02G023120 · TK1151
Cell membrane0.040
Rank 3 · TkA02G023120 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA02G023120 · TK1151
Plastid0.014
Rank 5 · TkA02G023120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16131Torus39-79 aa
PF00642zf-CCCH55-80 aa
PF25585zf-CCCH_DUS3L57-79 aa
PF15663zf-CCCH_358-80 aa
PF14608zf-CCCH_259-80 aa
PF18345zf_CCCH_460-79 aa
PF18044zf-CCCH_463-80 aa
PF22623zf-CCCH_965-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G023120PF16131Torus39798.1e-1143.2
TkA02G023120PF00642zf-CCCH55809.4e-44147.2
TkA02G023120PF25585zf-CCCH_DUS3L57792.4e-1556.9
TkA02G023120PF15663zf-CCCH_358800.0514.5
TkA02G023120PF14608zf-CCCH_259802.7e-1660.1
TkA02G023120PF18345zf_CCCH_460794.3e-2278.2
TkA02G023120PF18044zf-CCCH_463804e-1349.5
TkA02G023120PF22623zf-CCCH_965792.18.8
TkA02G023120PF25586zf-CCCH_PAN367810.001718.7
TkA02G023120PF00642zf-CCCH1001249.4e-44147.2
TkA02G023120PF25585zf-CCCH_DUS3L1001222.4e-1556.9
TkA02G023120PF16131Torus1011228.1e-1143.2
TkA02G023120PF14608zf-CCCH_21021232.7e-1660.1
TkA02G023120PF15663zf-CCCH_31021250.0514.5
TkA02G023120PF18345zf_CCCH_41031224.3e-2278.2
TkA02G023120PF18044zf-CCCH_41031234e-1349.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48772Arabidopsis thalianasp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 2644.500%Swiss-ProtMedium
Q94AD9Arabidopsis thalianasp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 349.500%Swiss-ProtMedium
Q8GXX7Arabidopsis thalianasp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 3345.300%Swiss-ProtMedium
Q2QT65Oryza sativa subsp. japonicasp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 6643.500%Swiss-ProtMedium

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