TkA02G019900 | RubberDandelionOmics

Gene overview

TkA02G019900

Reference: TK1151 Chr: Chr02 Coordinates: 4661725-4663741 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1635 bp · TkA02G019900|TK1151|cDNA

TTTCAACTCATTTTTCTTTCCACGAAAAAACCAGCGTTCGAAAAGTCTAAAGTCTACAATCACAAAGTCACAAGACACTCCTTCTCCAGTCATTTGCAGACTCGCAGTCTGAAACAAGAAAATCTCTACACCACCGTTTACTGCTTCTGCTCTCGAAGTCTCGCCGTCTCAGTTTCCTCCTTCTCGGCTACTGTCGCGTCTCGCGTCTCGATCTCTCTTTAGGATCCATCCATGGAAGACTTACCAGTACCTCTCATGGT...

CDS

Download CDS FASTA

1185 bp · TkA02G019900|TK1151|CDS

ATGGAAGACTTACCAGTACCTCTCATGGTTGAAATTCTGTCAAGACTTCCAGTCAAAACAATCATCCATTGCAAATGCGTTTGCAAGAAGTGGCTGAATCTCGTTTCAGATTCTTACTTTGCCAATCTCCACCTCTCGAGATCACCTGCAAGCCTCATTATTCATCATACTTCAAAAAAAGAAATGGCGGAGGGTTCCTTTATGCCAGGCATATTGAAGTTGGTGGAGGTTGAAGATGAACTTGATCACCACCATTTACA...

Protein

Download Protein FASTA

394 aa · TkA02G019900|TK1151|PROTEIN

MEDLPVPLMVEILSRLPVKTIIHCKCVCKKWLNLVSDSYFANLHLSRSPASLIIHHTSKKEMAEGSFMPGILKLVEVEDELDHHHLHHDPSMSLDLNLAPVFQKSKTFMAGSVDGLICMLQYYYRAESDNTYICNPITREYMIISNHQYYKDENYLTINYGFGVGLVTKEYKVVRTIVGDKPSSLLEAEVYTLGSGQWRCLGHVPYWINGFNGPFLNGHAHWTGSRSGSGSGSGSGSGSDEKICVFDFDEETFKSFPSPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G019900`
TK1151 ID	TkA02G019900
OH-1004 ID	LXL04_017637
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	70.900
Protein coverage (%)	TK1151 100.000 / OH-1004 92.060 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G019900

Location Chr02:4661725-4663741 (-)

Description Similar to At3g07870: F-box protein At3g07870

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65850`	F-box protein At5g65850.	No verified direct reference in this release
`At1g70380`	Putative F-box protein At1g70380.	No verified direct reference in this release
`At5g49610`	F-box protein At5g49610.	No verified direct reference in this release
`At2g15640`	F-box protein At2g15640.	No verified direct reference in this release
`At2g16450`	F-box protein At2g16450.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017637 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G30920

ath:AT3G06240

ath:AT3G07870

ath:AT3G23880

ath:AT5G49610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594

Rank 1 · TkA02G019900 · TK1151

Nucleus0.404

Rank 2 · TkA02G019900 · TK1151

Cell membrane0.129

Rank 3 · TkA02G019900 · TK1151

Endoplasmic reticulum0.075

Rank 4 · TkA02G019900 · TK1151

Lysosome / Vacuole0.053

Rank 5 · TkA02G019900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box2-40 aa

PF12937F-box-like2-39 aa

PF24750b-prop_At3g26010-like43-68 aa

PF07734FBA_190-347 aa

PF08268FBA_3101-348 aa

PF24750b-prop_At3g26010-like102-226 aa

PF04360Serglycin225-240 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G019900	`PF00646`	F-box	2	40	2e-09	37.7
TkA02G019900	`PF12937`	F-box-like	2	39	1.1e-08	35.4
TkA02G019900	`PF24750`	b-prop_At3g26010-like	43	68	6.4e-07	29.5
TkA02G019900	`PF07734`	FBA_1	90	347	6.6e-21	75.3
TkA02G019900	`PF08268`	FBA_3	101	348	7.3e-18	65.4
TkA02G019900	`PF24750`	b-prop_At3g26010-like	102	226	6.4e-07	29.5
TkA02G019900	`PF04360`	Serglycin	225	240	0.011	16.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHP3`	Arabidopsis thaliana	sp\|Q9FHP3\|FB300_ARATH F-box protein At5g65850	25.300%	Swiss-Prot	Low
`O64598`	Arabidopsis thaliana	sp\|O64598\|FB82_ARATH Putative F-box protein At1g70380	27.200%	Swiss-Prot	Low
`Q9FGY4`	Arabidopsis thaliana	sp\|Q9FGY4\|FB341_ARATH F-box protein At5g49610	25.800%	Swiss-Prot	Low
`Q9ZQF0`	Arabidopsis thaliana	sp\|Q9ZQF0\|FB104_ARATH F-box protein At2g15640	23.300%	Swiss-Prot	Low
`Q9SIV7`	Arabidopsis thaliana	sp\|Q9SIV7\|FB108_ARATH F-box protein At2g16450	24.900%	Swiss-Prot	Low

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