TkA02G015240 | RubberDandelionOmics

Gene overview

TkA02G015240

Reference: TK1151 Chr: Chr02 Coordinates: 3496083-3498036 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1602 bp · TkA02G015240|TK1151|cDNA

ATGGCTTCTTTGAGCTTTACTTTAGGCACAGCCACCACCTGTTATTCACCGGCTTTCTTTTCTGGAAACCAGCGACGGTTGAAGACACATGCGAAGCAAACCCATCGCTTCCAGGTCTCATGCAACGTCTCATCAGATGACCAACAAAAACCACTCCCCAGAAACCCTGATCAACCTCAAAAGCTTATACTGCCCGAATCATCACTCCATTTGCAGAATGTAGACAGAAGGAATCTGCTGGTGGGGCTCGGAGGCCTCTA...

CDS

Download CDS FASTA

1602 bp · TkA02G015240|TK1151|CDS

ATGGCTTCTTTGAGCTTTACTTTAGGCACAGCCACCACCTGTTATTCACCGGCTTTCTTTTCTGGAAACCAGCGACGGTTGAAGACACATGCGAAGCAAACCCATCGCTTCCAGGTCTCATGCAACGTCTCATCAGATGACCAACAAAAACCACTCCCCAGAAACCCTGATCAACCTCAAAAGCTTATACTGCCCGAATCATCACTCCATTTGCAGAATGTAGACAGAAGGAATCTGCTGGTGGGGCTCGGAGGCCTCTA...

Protein

Download Protein FASTA

533 aa · TkA02G015240|TK1151|PROTEIN

MASLSFTLGTATTCYSPAFFSGNQRRLKTHAKQTHRFQVSCNVSSDDQQKPLPRNPDQPQKLILPESSLHLQNVDRRNLLVGLGGLYGVVNLIGRLSPPAFADPIRSPAILEPSLAPHCKTARSGFVGQDRLPKGRDGAYCPPASTEGPETDYDLDKVESRSSTRVRKPIHSFPYGLERYMEGLKLMRALNDDDPPVSRTKLKFIALTAMALTCRTIKKSRFTTAGTFFPSIAELFVNDEQNSLYDEYRNPDHLNSVIVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G015240`
TK1151 ID	TkA02G015240
OH-1004 ID	LXL04_019102
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	34.900
Protein coverage (%)	TK1151 99.062 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA02G015240`
Location	Chr02:3496083-3498036 (-)
Description	Similar to Polyphenol oxidase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019102` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0046148 pigment biosynthetic process Biological Process GO:1901708 (+)-3'-hydroxylarreatricin biosynthetic process Biological Process GO:1901709 (+)-larreatricin metabolic process Biological Process GO:0009543 chloroplast thylakoid lumen Cellular Component GO:0004097 catechol oxidase activity Molecular Function GO:0005507 copper ion binding Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	mdm:103446446 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.884

Rank 1 · TkA02G015240 · TK1151

Mitochondrion0.059

Rank 2 · TkA02G015240 · TK1151

Cytoplasm0.046

Rank 3 · TkA02G015240 · TK1151

Extracellular0.035

Rank 4 · TkA02G015240 · TK1151

Lysosome / Vacuole0.030

Rank 5 · TkA02G015240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12143PPO1_KFDV31-49 aa

PF00264Tyrosinase291-353 aa

PF12143PPO1_KFDV380-516 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G015240	`PF12143`	PPO1_KFDV	31	49	7.7e-21	75.2
TkA02G015240	`PF00264`	Tyrosinase	291	353	2.4e-13	51.7
TkA02G015240	`PF12143`	PPO1_KFDV	380	516	7.7e-21	75.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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