TkA01G642220 | RubberDandelionOmics

Gene overview

TkA01G642220

Reference: TK1151 Chr: Chr01 Coordinates: 162523703-162524362 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

576 bp · TkA01G642220|TK1151|cDNA

ATGGCTTCATCACCGGCGATCCTTCCCATCTCAAACCAACATACCATTTCCAGCGGTGAAGCCCTCGCGCCCGTTTCCACCCCTGCCTTCCGTTCTTTCATCAACAACATCACCGAAACCGTCCGATCTGGACTCTCCAGTCGCCGTCCATGGTCTGAACTCGTCGACCGCTCTGCGTTCTCAAAACCAGACTCCATAACCGACGCCGCAGGCCGGATCCGAAAGAACTACTCCTACTTCCGTGTCAACTATATCACTGT...

CDS

Download CDS FASTA

576 bp · TkA01G642220|TK1151|CDS

ATGGCTTCATCACCGGCGATCCTTCCCATCTCAAACCAACATACCATTTCCAGCGGTGAAGCCCTCGCGCCCGTTTCCACCCCTGCCTTCCGTTCTTTCATCAACAACATCACCGAAACCGTCCGATCTGGACTCTCCAGTCGCCGTCCATGGTCTGAACTCGTCGACCGCTCTGCGTTCTCAAAACCAGACTCCATAACCGACGCCGCAGGCCGGATCCGAAAGAACTACTCCTACTTCCGTGTCAACTATATCACTGT...

Protein

Download Protein FASTA

191 aa · TkA01G642220|TK1151|PROTEIN

MASSPAILPISNQHTISSGEALAPVSTPAFRSFINNITETVRSGLSSRRPWSELVDRSAFSKPDSITDAAGRIRKNYSYFRVNYITVIAAVLGFSLLTNPFSLIILVGLLAAWLFLYLFRPSDPPLVIFGRTFSERETLAVVSAHGAFRTPEDLFLDEQEPGASTGFLSFLSGAATSAAASAAPVVAAARV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G642220`
TK1151 ID	TkA01G642220
OH-1004 ID	LXL04_000007
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	87.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G642220

Location Chr01:162523703-162524362 (-)

Description Similar to PRA1B4: PRA1 family protein B4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38360`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At5g05380`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At3g56110`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At2g40380`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At5g01640`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000007 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016192 vesicle-mediated transport Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010008 endosome membrane Cellular Component

KEGG gene cross-reference

ath:AT2G38360

ath:AT2G40380

ath:AT3G56110

ath:AT5G01640

ath:AT5G05380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.381

Rank 1 · TkA01G642220 · TK1151

Endoplasmic reticulum0.350

Rank 2 · TkA01G642220 · TK1151

Cytoplasm0.170

Rank 3 · TkA01G642220 · TK1151

Nucleus0.124

Rank 4 · TkA01G642220 · TK1151

Lysosome / Vacuole0.108

Rank 5 · TkA01G642220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03208PRA144-143 aa

PF03899ATP-synt_I80-120 aa

PF02495TGBp3103-128 aa

PF03208PRA1139-159 aa

PF03899ATP-synt_I166-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G642220	`PF03208`	PRA1	44	143	5.5e-36	124.0
TkA01G642220	`PF03899`	ATP-synt_I	80	120	7.6	7.8
TkA01G642220	`PF02495`	TGBp3	103	128	0.13	12.6
TkA01G642220	`PF03208`	PRA1	139	159	5.5e-36	124.0
TkA01G642220	`PF03899`	ATP-synt_I	166	178	7.6	7.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80915`	Arabidopsis thaliana	sp\|O80915\|PR1B4_ARATH PRA1 family protein B4	60.100%	Swiss-Prot	High
`Q9FLB6`	Arabidopsis thaliana	sp\|Q9FLB6\|PR1B3_ARATH PRA1 family protein B3	53.400%	Swiss-Prot	High
`Q9LYN0`	Arabidopsis thaliana	sp\|Q9LYN0\|PR1B1_ARATH PRA1 family protein B1	51.000%	Swiss-Prot	High
`Q9SIY7`	Arabidopsis thaliana	sp\|Q9SIY7\|PR1B2_ARATH PRA1 family protein B2	51.400%	Swiss-Prot	High
`Q9M012`	Arabidopsis thaliana	sp\|Q9M012\|PR1B5_ARATH PRA1 family protein B5	50.500%	Swiss-Prot	High

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