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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G637580
Reference: TK1151 Chr: Chr01 Coordinates: 161292434-161294437 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2004 bp · TkA01G637580|TK1151|cDNA

ATGGCCATTTCACCGGAACCTTTGCCGCCAAAAAAGAAGCGATCGTCGGATTCAGATGAAAGGCTTCTCCGATCATTGTTGCTCCGATCGAAAGAAACTTCGTCTCTGAATCCGATTCCGTTTGTTCTTCATCGGAATTCGAATTCGATTATTCGGAAAACTAAGCTGTTGACTTTGCTTCTTGAGGAATTGGTTGTTGATCATGTTTTATCGAGTTTTCCGGCATCGGCGGTGTTGTGTTTTGAGGAGTTATACATCGT...

CDS

Download CDS FASTA

2004 bp · TkA01G637580|TK1151|CDS

ATGGCCATTTCACCGGAACCTTTGCCGCCAAAAAAGAAGCGATCGTCGGATTCAGATGAAAGGCTTCTCCGATCATTGTTGCTCCGATCGAAAGAAACTTCGTCTCTGAATCCGATTCCGTTTGTTCTTCATCGGAATTCGAATTCGATTATTCGGAAAACTAAGCTGTTGACTTTGCTTCTTGAGGAATTGGTTGTTGATCATGTTTTATCGAGTTTTCCGGCATCGGCGGTGTTGTGTTTTGAGGAGTTATACATCGT...

Protein

Download Protein FASTA

667 aa · TkA01G637580|TK1151|PROTEIN

MAISPEPLPPKKKRSSDSDERLLRSLLLRSKETSSLNPIPFVLHRNSNSIIRKTKLLTLLLEELVVDHVLSSFPASAVLCFEELYIVLQSIKTLIEDCCNGSKLWLLIEQQSVANKFHEFTLELSTLIDIFPVKAMNLGQDVEELVNLIRKQCSNTPALLDDKDINLRNDVLEKLARIKSEIIPQETKLKEVFTRLQLNDSTSCTEEIEILEEEVRNQSDEKSKAEIVSLIGLVRYAKCVLYGESSPRRIIDRKKSNSTD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G637580
TK1151 IDTkA01G637580
OH-1004 IDLXL04_000067
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G637580
LocationChr01:161292434-161294437 (-)
DescriptionSimilar to PUB16: U-box domain-containing protein 16
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g29340 Functions as an E3 ubiquitin ligase.
The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense.2006 · DOI: 10.1105/tpc.105.039198
At1g60190 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0234300 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000067 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0009609 response to symbiotic bacterium Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0009877 nodulation Biological Process
GO:0010029 regulation of seed germination Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0036377 arbuscular mycorrhizal association Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G29340
ath:AT1G60190
ath:AT5G01830
dosa:Os02g0234300
mtr:11430446
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598
Rank 1 · TkA01G637580 · TK1151
Nucleus0.371
Rank 2 · TkA01G637580 · TK1151
Cell membrane0.148
Rank 3 · TkA01G637580 · TK1151
Endoplasmic reticulum0.054
Rank 4 · TkA01G637580 · TK1151
Lysosome / Vacuole0.035
Rank 5 · TkA01G637580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19584MCAfunc45-172 aa
PF25368PUB10_N47-152 aa
PF13646HEAT_2159-181 aa
PF13646HEAT_2209-238 aa
PF04564U-box263-334 aa
PF11789zf-Nse266-308 aa
PF13445zf-RING_UBOX269-305 aa
PF15227zf-C3HC4_4269-305 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G637580PF19584MCAfunc451720.01415.8
TkA01G637580PF25368PUB10_N471529e-1143.2
TkA01G637580PF13646HEAT_21591810.4311.6
TkA01G637580PF13646HEAT_22092380.4311.6
TkA01G637580PF04564U-box2633341.7e-1764.0
TkA01G637580PF11789zf-Nse2663080.005417.2
TkA01G637580PF13445zf-RING_UBOX2693050.07213.8
TkA01G637580PF15227zf-C3HC4_42693050.2312.3
TkA01G637580PF25598ARM_PUB3686405.7e-1452.9
TkA01G637580PF00514Arm3964323e-1246.8
TkA01G637580PF13646HEAT_24004280.4311.6
TkA01G637580PF30196WRM1_C4044660.01614.9
TkA01G637580PF00514Arm4905173e-1246.8
TkA01G637580PF13646HEAT_24925280.4311.6
TkA01G637580PF00514Arm5685963e-1246.8
TkA01G637580PF13646HEAT_25725950.4311.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZW3Arabidopsis thalianasp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 1651.500%Swiss-ProtHigh
Q9C7R6Arabidopsis thalianasp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 1739.000%Swiss-ProtMedium
O80742Arabidopsis thalianasp|O80742|PUB19_ARATH U-box domain-containing protein 1928.700%Swiss-ProtLow
Q6EUK7Oryza sativa subsp. japonicasp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 438.100%Swiss-ProtMedium

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