Gene Card
Gene overview
cDNA / CDS / Protein Sequences
780 bp · TkA01G635870|TK1151|cDNA
GAACCTTCTCGAAAGAGGAAGGGCAAAGGAAAAAGGAAGGGCAAAGGAAAAGTCAAGAATGCCCAAACCAAAGCGGTCCCTTGGAATGAAACTGAGCATCTTGTGCTAGCGGATGCATGGTGTACGACTTCAAAACACCCTATTAAAGGCAATGGTCAAACAAAAGACAACTTTTGGGAAGCGATACAGAAAAAGTTTTTTGACATCTTGAAGCGTACGCCGAATCGGAACACCGATGGTTTAAGTAGAAAATGGCGAGA...
780 bp · TkA01G635870|TK1151|CDS
GAACCTTCTCGAAAGAGGAAGGGCAAAGGAAAAAGGAAGGGCAAAGGAAAAGTCAAGAATGCCCAAACCAAAGCGGTCCCTTGGAATGAAACTGAGCATCTTGTGCTAGCGGATGCATGGTGTACGACTTCAAAACACCCTATTAAAGGCAATGGTCAAACAAAAGACAACTTTTGGGAAGCGATACAGAAAAAGTTTTTTGACATCTTGAAGCGTACGCCGAATCGGAACACCGATGGTTTAAGTAGAAAATGGCGAGA...
Protein
Download Protein FASTA259 aa · TkA01G635870|TK1151|PROTEIN
EPSRKRKGKGKRKGKGKVKNAQTKAVPWNETEHLVLADAWCTTSKHPIKGNGQTKDNFWEAIQKKFFDILKRTPNRNTDGLSRKWRDLSKKCTKFNGIYTNIENQKPSGWNEMNYLLAAKSQYRATEGQDFTHEKVWQRVRHEQKWLSQETSEDHSKISRGNSSVDVSDAHVNIDLNAGSDAFTVDLEDHKEDAPGRLQDQWEGKKQSERLDMGRSLRRRTSIGRKCNEQCSNTSKQRKRRNNCENNTWNFFARKNNAR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G635870 |
|---|---|
| TK1151 ID | TkA01G635870 |
| OH-1004 ID | LXL04_022192 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 75.400 |
| Protein coverage (%) | TK1151 75.290 / OH-1004 23.913Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G635870 |
|---|---|
| Location | Chr01:160851653-160854631 (-) |
| Description | Similar to At3g03920: Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000454 snoRNA guided rRNA pseudouridine synthesis Biological Process GO:0031120 snRNA pseudouridine synthesis Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0031429 box H/ACA snoRNP complex Cellular Component GO:0003729 mRNA binding Molecular Function GO:0034513 box H/ACA snoRNA binding Molecular Function GO:0042802 identical protein binding Molecular Function |
| KEGG gene cross-reference | ath:AT3G03920 ath:AT5G18180 kla:KLLA0_F21604g pic:PICST_75322 sce:YHR089C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.