TkA01G635700 | RubberDandelionOmics

Gene overview

TkA01G635700

Reference: TK1151 Chr: Chr01 Coordinates: 160808665-160812401 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2294 bp · TkA01G635700|TK1151|cDNA

AAAAATGTAAAAAAGTTATTATTTGAAGTCAAAAGAAAATTTTAATGGTATTGAAAAAAGTTTAAAATGAAATCATAAACGATGATAACTATAGGTATCAGTTTTATCAAGAAAGTTTAGACAAAAACTATAGACAAATACAACGTGAGAAGGAACCAAAACGGCGGTTTAGTTATCTCCGCTGCTATTTGGAGCTCTATGTTGTCTGCTTTCCACTTGTACAGATTAATAAAGGGATCAATCAAAATTTAATTAAATTT...

CDS

Download CDS FASTA

1881 bp · TkA01G635700|TK1151|CDS

ATGAGAGGGGATAACTTACGGCTTGTAATTTGCATTTGGATTTTGTTTATACATAGATCTTGTTTCTGTAATTTTGTGGTCGAAAAGAATAGTTTGAAGGTGACTTCACCTGAGAGTTTAAGAGGTACATATGAATGCGCAATCGGTAATTTCGGTGTTCCTCGATATGGAGGAAGATTAAGCGGCTTAGTTACATATCCGAAAACTAACCAAAATTCTTGCAAAAACTTCACCGATGATATCCACTTGATTTCAAAGAA...

Protein

Download Protein FASTA

626 aa · TkA01G635700|TK1151|PROTEIN

MRGDNLRLVICIWILFIHRSCFCNFVVEKNSLKVTSPESLRGTYECAIGNFGVPRYGGRLSGLVTYPKTNQNSCKNFTDDIHLISKKPGSIPVFLLADRGECYFTTKAWNAQNTGASAILVADDRPEHLITMDLPEKEETLDYLQNITIPPVLITHSLGVSLKKALESNNLVFVNLDWTEALPHPDDRVEYEFWTNSNDECGPKCDTQIDIVKSFKGFAQLLERKGYTRFTPHYITWFCPEEYVSSTKCKSQCINHGRYC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G635700`
TK1151 ID	TkA01G635700
OH-1004 ID	LXL04_000084
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G635700

Location Chr01:160808665-160812401 (+)

Description Similar to VSR2: Vacuolar-sorting receptor 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30290`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At2g14740`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At2g14720`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At3g52850`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana.2003 · DOI: 10.1073/pnas.2530568100

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000084 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0006896 Golgi to vacuole transport Biological Process

GO:0007034 vacuolar transport Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005770 late endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT2G14720

ath:AT2G14740

ath:AT2G30290

ath:AT3G52850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.391

Rank 1 · TkA01G635700 · TK1151

Golgi apparatus0.240

Rank 2 · TkA01G635700 · TK1151

Cytoplasm0.238

Rank 3 · TkA01G635700 · TK1151

Cell membrane0.213

Rank 4 · TkA01G635700 · TK1151

Endoplasmic reticulum0.172

Rank 5 · TkA01G635700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07645EGF_CA41-46 aa

PF02365NAM70-114 aa

PF02225PA94-161 aa

PF25011VSR_TRX189-397 aa

PF02365NAM237-303 aa

PF07645EGF_CA248-255 aa

PF12947EGF_3309-322 aa

PF07645EGF_CA337-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G635700	`PF07645`	EGF_CA	41	46	0.0012	19.7
TkA01G635700	`PF02365`	NAM	70	114	0.25	12.6
TkA01G635700	`PF02225`	PA	94	161	1.8e-10	41.5
TkA01G635700	`PF25011`	VSR_TRX	189	397	6.2e-99	330.6
TkA01G635700	`PF02365`	NAM	237	303	0.25	12.6
TkA01G635700	`PF07645`	EGF_CA	248	255	0.0012	19.7
TkA01G635700	`PF12947`	EGF_3	309	322	3.1	8.8
TkA01G635700	`PF07645`	EGF_CA	337	342	0.0012	19.7
TkA01G635700	`PF07645`	EGF_CA	416	449	0.0012	19.7
TkA01G635700	`PF12947`	EGF_3	419	461	3.1	8.8
TkA01G635700	`PF12662`	cEGF	446	464	3.5e-05	24.3
TkA01G635700	`PF02365`	NAM	471	501	0.25	12.6
TkA01G635700	`PF12947`	EGF_3	472	511	3.1	8.8
TkA01G635700	`PF07645`	EGF_CA	499	514	0.0012	19.7
TkA01G635700	`PF12662`	cEGF	500	519	3.5e-05	24.3
TkA01G635700	`PF07645`	EGF_CA	516	546	0.0012	19.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22925`	Arabidopsis thaliana	sp\|O22925\|VSR2_ARATH Vacuolar-sorting receptor 2	65.500%	Swiss-Prot	High
`O80977`	Arabidopsis thaliana	sp\|O80977\|VSR3_ARATH Vacuolar-sorting receptor 3	64.400%	Swiss-Prot	High
`Q56ZQ3`	Arabidopsis thaliana	sp\|Q56ZQ3\|VSR4_ARATH Vacuolar-sorting receptor 4	64.000%	Swiss-Prot	High
`P93026`	Arabidopsis thaliana	sp\|P93026\|VSR1_ARATH Vacuolar-sorting receptor 1	63.200%	Swiss-Prot	High

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