TkA01G631550 | RubberDandelionOmics

Gene overview

TkA01G631550

Reference: TK1151 Chr: Chr01 Coordinates: 159751373-159752659 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1221 bp · TkA01G631550|TK1151|cDNA

ATGCTCTCTTGCCAATACATCCAAAAGGGTGTTCTGCTCTCTCAACCCCCTTTGCCTTCCGATCAACTAATTTCCCTCCTCAAACTCTCTCTCTCCAAAACCCTCTCTCAATTCCCGGCTCTCGCCGGCCACCTCTCCACCGACAACAAAGGCCATGTTAACATCATCTGCGACGATTCCGGTGTGGAATTCATTCATTCCACTGCTACCGATCTCTTCACCCATCAAATTCTACTCCCAAATTACGACGTTCACCCATG...

CDS

Download CDS FASTA

1221 bp · TkA01G631550|TK1151|CDS

ATGCTCTCTTGCCAATACATCCAAAAGGGTGTTCTGCTCTCTCAACCCCCTTTGCCTTCCGATCAACTAATTTCCCTCCTCAAACTCTCTCTCTCCAAAACCCTCTCTCAATTCCCGGCTCTCGCCGGCCACCTCTCCACCGACAACAAAGGCCATGTTAACATCATCTGCGACGATTCCGGTGTGGAATTCATTCATTCCACTGCTACCGATCTCTTCACCCATCAAATTCTACTCCCAAATTACGACGTTCACCCATG...

Protein

Download Protein FASTA

406 aa · TkA01G631550|TK1151|PROTEIN

MLSCQYIQKGVLLSQPPLPSDQLISLLKLSLSKTLSQFPALAGHLSTDNKGHVNIICDDSGVEFIHSTATDLFTHQILLPNYDVHPCFKTFFAFDKTLSYAGHHQPIAAVQVTELGDGVFIGCTVNHAVVDGTSFWNFFNTFAEISKGAKKEGGPAATFSGDEPLRERIIHFSRESILKMKFRANNPLWKPQNSDLNDAEIYGKANNDSNGKHNGTLLPKSEISSFQSLCAQLWRSVTRARKFHDTKTTTFRMAVNCRHR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G631550`
TK1151 ID	TkA01G631550
OH-1004 ID	LXL04_000136
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.600
Protein coverage (%)	TK1151 100.000 / OH-1004 91.258 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G631550

Location Chr01:159751373-159752659 (-)

Description Similar to DCR: BAHD acyltransferase DCR

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50280`	Uncharacterized acetyltransferase At3g50280.	No verified direct reference in this release
`At5g23940`	Required for incorporation of 9(10),16-dihydroxy-hexadecanoic acid into cutin.	No verified direct reference in this release
`At5g48930`	Acyltransferase involved in the biosynthesis of lignin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000136 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009697 salicylic acid biosynthetic process Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0009963 positive regulation of flavonoid biosynthetic process Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0090626 plant epidermis morphogenesis Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900424 regulation of defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT3G50280

ath:AT5G23940

ath:AT5G48930

ath:AT5G67160

nta:107796658

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.671

Rank 1 · TkA01G631550 · TK1151

Nucleus0.350

Rank 2 · TkA01G631550 · TK1151

Endoplasmic reticulum0.091

Rank 3 · TkA01G631550 · TK1151

Cell membrane0.071

Rank 4 · TkA01G631550 · TK1151

Lysosome / Vacuole0.043

Rank 5 · TkA01G631550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02458Transferase1-401 aa

PF22664TRI-like_N21-133 aa

PF22664TRI-like_N287-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G631550	`PF02458`	Transferase	1	401	6.4e-88	296.0
TkA01G631550	`PF22664`	TRI-like_N	21	133	0.0052	17.3
TkA01G631550	`PF22664`	TRI-like_N	287	322	0.0052	17.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SND9`	Arabidopsis thaliana	sp\|Q9SND9\|Y3028_ARATH Uncharacterized acetyltransferase At3g50280	29.500%	Swiss-Prot	Low
`Q9FF86`	Arabidopsis thaliana	sp\|Q9FF86\|DCR_ARATH BAHD acyltransferase DCR	31.300%	Swiss-Prot	Medium
`Q9FI78`	Arabidopsis thaliana	sp\|Q9FI78\|HST_ARATH Shikimate O-hydroxycinnamoyltransferase	27.800%	Swiss-Prot	Low

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