TkA01G630370 | RubberDandelionOmics

Gene overview

TkA01G630370

Reference: TK1151 Chr: Chr01 Coordinates: 159404508-159407082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1410 bp · TkA01G630370|TK1151|cDNA

GAAATTCGCTGATTTCGCGGTGTGTCATCCTCTTTCCAAGAAATAGCAAGCATTAGGCTGACGTCCAAGAAACGTGAAGTACAGTTTTCTCGGAACTCGATTTGGGTTTTCTCCGATCCGCTTCTCAAATCTCTCCCTTCACGTGTTTGCGAAAAGACAGTCTGGTTTACTCTAGGTCTTCAATTGTACTGGCGTCAGGAAAATTTAAACATTCAAGTAGTCAATGGCATCACGAACAACAATCAGGAGAAGACTCCATC...

CDS

Download CDS FASTA

969 bp · TkA01G630370|TK1151|CDS

ATGGCATCACGAACAACAATCAGGAGAAGACTCCATCATGGAGATGTCGGCGGTAAAAAACATGAACACTTAACAGGTGCAGATTTAAATGACCTAAACGAACCTTTACTTGGAAATAACGATGAAGACAAAGCTAAGCGCATAGAGGTCCAGAGGCTTGAAGATACTTACTACGATGAAAAAACAAAAGAAAACCTTCATTGGGCGTTTTTATTCTCTCATGTAATTTCAGAATGGGCACAATGGTTAGCAAGACTTGT...

Protein

Download Protein FASTA

322 aa · TkA01G630370|TK1151|PROTEIN

MASRTTIRRRLHHGDVGGKKHEHLTGADLNDLNEPLLGNNDEDKAKRIEVQRLEDTYYDEKTKENLHWAFLFSHVISEWAQWLARLVLGSGSFIARMLTLPSTTGSESTKKFLPPLLTPLQETRLRTLQKRLEVPFDGSCLEHQDALRILWRLAYPNRELPGLKSEAWKDMGWQGSDPSTDFRGGGFISLENLIFFAKRYPEAFENLLNKNEGDRAEWEYPFAVAGINISFMLVQMLEIQSGKPTSLSGIRFLEFLSNDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G630370`
TK1151 ID	TkA01G630370
OH-1004 ID	LXL04_000163
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G630370`
Location	Chr01:159404508-159407082 (-)
Description	Similar to elmoA: ELMO domain-containing protein A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000163` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006909 phagocytosis Biological Process GO:0007015 actin filament organization Biological Process GO:0030837 negative regulation of actin filament polymerization Biological Process GO:0048870 cell motility Biological Process GO:0050764 regulation of phagocytosis Biological Process GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0005096 GTPase activator activity Molecular Function GO:0017124 SH3 domain binding Molecular Function GO:0045159 myosin II binding Molecular Function
KEGG gene cross-reference	ddi:DDB_G0278051 ddi:DDB_G0280179 ddi:DDB_G0282949 mmu:234683 rno:291962 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.300

Rank 1 · TkA01G630370 · TK1151

Golgi apparatus0.293

Rank 2 · TkA01G630370 · TK1151

Endoplasmic reticulum0.287

Rank 3 · TkA01G630370 · TK1151

Cell membrane0.212

Rank 4 · TkA01G630370 · TK1151

Nucleus0.180

Rank 5 · TkA01G630370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04727ELMO_CED12127-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G630370	`PF04727`	ELMO_CED12	127	292	7.6e-52	176.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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