TkA01G629260 | RubberDandelionOmics

Gene overview

TkA01G629260

Reference: TK1151 Chr: Chr01 Coordinates: 159143416-159148565 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2821 bp · TkA01G629260|TK1151|cDNA

GTTCTTAGCACCACCCGGCCACTTCGATATCGTACGCCTCCCTCCTCCTTCCTGAAGTGCAAAGAGTTTCAAAATCGCTGGATTGTTTCTTAGATTAGTTTCCATCAACATTTCTGCCACAACTCACTCGCTCACACTCTCGTCAAGTGAACATAGTGGAGGTAATCTCTGGATTCTTAGATCTCCGTGGGGTGCACATCAAATCTGAGGAGGACAGTTTGCAACTAAAAATTGCGGTCTGAGTTTGCACATTTCGGCGT...

CDS

Download CDS FASTA

2109 bp · TkA01G629260|TK1151|CDS

ATGGAAGACAATTTAGGTTCAGATACAGTTCCTTCTGGCCCTCTCGACAAAAACAAGGTGTTCGCCATTAAGCCATTAAGATGTCTAGTTCCAATTTTCCCATCAGGTTCAGGTCCATCTGCAACACAACAATCTCCATTTGCATTTGTTGCTCCAACTGGTCCATTTCCCCCTGGCTCCGCCCAATTCTTCCCCTTTGTTCCCCCAAATGAGTCTCAAAGACAACCCCCCACCACTACCCCTGCACCAGATACCACCAA...

Protein

Download Protein FASTA

702 aa · TkA01G629260|TK1151|PROTEIN

MEDNLGSDTVPSGPLDKNKVFAIKPLRCLVPIFPSGSGPSATQQSPFAFVAPTGPFPPGSAQFFPFVPPNESQRQPPTTTPAPDTTKSYAIPSPVPLNSFRTPTSAPPPDNGTKVTTTTTTRRSSKTLTPYDDVYTQTDNYENGFTIDTEDSGDAIKRKRKIRKTVKGSQAVAVSSSEVDIDPLVNHLLKSFRLVDIDTILQADSNHELVQRVVLVYNLLRRKITQLDDAKGVIPGISRRADLRSGTILMNKGARVNTKR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G629260`
TK1151 ID	TkA01G629260
OH-1004 ID	LXL04_000174
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 89.885 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G629260

Location Chr01:159143416-159148565 (+)

Description Similar to SUVH1: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73100`	Histone methyltransferase.	No verified direct reference in this release
`At5g04940`	Histone methyltransferase.	Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.2005 · DOI: 10.1038/sj.emboj.7600604
`At1g17770`	Histone methyltransferase.	No verified direct reference in this release
`At2g24740`	Histone methyltransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000174 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008361 regulation of cell size Biological Process

GO:0032259 methylation Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0048366 leaf development Biological Process

GO:0000775 chromosome, centromeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function

GO:0003690 double-stranded DNA binding Molecular Function

GO:0008168 methyltransferase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0010385 double-stranded methylated DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G17770

ath:AT1G73100

ath:AT2G24740

ath:AT5G04940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.938

Rank 1 · TkA01G629260 · TK1151

Cytoplasm0.080

Rank 2 · TkA01G629260 · TK1151

Cell membrane0.036

Rank 3 · TkA01G629260 · TK1151

Plastid0.021

Rank 4 · TkA01G629260 · TK1151

Endoplasmic reticulum0.020

Rank 5 · TkA01G629260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02182SAD_SRA261-414 aa

PF26348SRA_ScoMcrA312-376 aa

PF05033Pre-SET444-539 aa

PF00856SET512-530 aa

PF00856SET558-676 aa

PF02182SAD_SRA650-665 aa

PF05033Pre-SET688-698 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G629260	`PF02182`	SAD_SRA	261	414	1.1e-53	181.7
TkA01G629260	`PF26348`	SRA_ScoMcrA	312	376	0.013	16.0
TkA01G629260	`PF05033`	Pre-SET	444	539	3.8e-19	69.9
TkA01G629260	`PF00856`	SET	512	530	1.2e-19	71.4
TkA01G629260	`PF00856`	SET	558	676	1.2e-19	71.4
TkA01G629260	`PF02182`	SAD_SRA	650	665	1.1e-53	181.7
TkA01G629260	`PF05033`	Pre-SET	688	698	3.8e-19	69.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5P4`	Arabidopsis thaliana	sp\|Q9C5P4\|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3	46.300%	Swiss-Prot	Medium
`Q9FF80`	Arabidopsis thaliana	sp\|Q9FF80\|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1	45.900%	Swiss-Prot	Medium
`Q9C5P1`	Arabidopsis thaliana	sp\|Q9C5P1\|SUVH7_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7	41.300%	Swiss-Prot	Medium
`Q9C5P0`	Arabidopsis thaliana	sp\|Q9C5P0\|SUVH8_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8	43.200%	Swiss-Prot	Medium

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