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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G626810
Reference: TK1151 Chr: Chr01 Coordinates: 158206309-158209005 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2191 bp · TkA01G626810|TK1151|cDNA

CTTATGCTAAAATACAGGGACATATTGTTTACCTCATGTAAAAGTATAGGGGATGTTTACGACTCTTCCTATATGTTGTTAGGGTTTAACAGCAAAAAGGGGGTTTAAGCGGGTTCCCCATTTCTTCTCTGCACCTCTCTGGTTTTCATTTCTTGACACGAAATTATGTGGGCGCTCCGACGAACCTCCTCTATCGCTCTCAGGTCACAAACATTTTCAGCAGTCACCTTTCGTCCATCATTTCCGGAACACAAAACACC...

CDS

Download CDS FASTA

1809 bp · TkA01G626810|TK1151|CDS

ATGTGGGCGCTCCGACGAACCTCCTCTATCGCTCTCAGGTCACAAACATTTTCAGCAGTCACCTTTCGTCCATCATTTCCGGAACACAAAACACCATTTTCAACATATACAGACAAAACAAGATCCCACAACCCACTACCACACCCAAGTGGGTCCCGAATCCTAAATACATATTCTTCAAGTTCAAGTACACATTCCAACACCACCTCAAATCACACCTACTCTTCAATAGCTGGCACAATAACCAATGGGGAGAAAGA...

Protein

Download Protein FASTA

602 aa · TkA01G626810|TK1151|PROTEIN

MWALRRTSSIALRSQTFSAVTFRPSFPEHKTPFSTYTDKTRSHNPLPHPSGSRILNTYSSSSSTHSNTTSNHTYSSIAGTITNGEKEQEEEDDDNKLEDGFSELEDESDNESISENDTEVMGPKVTKTNQQKRAFSEIFKAIMDSPFQPVQKTLDNWLEKGDSITRSDISIAMLEFRRRKMYGKALHLSEWLQSRKQLQFNEKDYSSHVDLISKVHGLQAAEKYISKIPKSFQGELVYRTLLANCVITTDTTKAEQIFNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G626810
TK1151 IDTkA01G626810
OH-1004 IDLXL04_000237
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G626810
LocationChr01:158206309-158209005 (+)
DescriptionSimilar to At1g80270: Pentatricopeptide repeat-containing protein At1g80270, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g80270 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial. No verified direct reference in this release
At1g15480 Pentatricopeptide repeat-containing protein At1g15480, mitochondrial. No verified direct reference in this release
At3g15590 Pentatricopeptide repeat-containing protein At3g15590, mitochondrial. No verified direct reference in this release
At2g20710 Pentatricopeptide repeat-containing protein At2g20710, mitochondrial. No verified direct reference in this release
At5g09450 Pentatricopeptide repeat-containing protein At5g09450, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000237 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process
GO:1903427 negative regulation of reactive oxygen species biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005761 mitochondrial ribosome Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
KEGG gene cross-reference
ath:AT1G15480
ath:AT1G60770
ath:AT1G80270
ath:AT3G15590
ath:AT4G02820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.793
Rank 1 · TkA01G626810 · TK1151
Plastid0.147
Rank 2 · TkA01G626810 · TK1151
Nucleus0.057
Rank 3 · TkA01G626810 · TK1151
Cytoplasm0.036
Rank 4 · TkA01G626810 · TK1151
Cell membrane0.012
Rank 5 · TkA01G626810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21109Stonustoxin_helical6-39 aa
PF17177PPR_long55-118 aa
PF29070MSC6_N61-124 aa
PF21109Stonustoxin_helical123-160 aa
PF21109Stonustoxin_helical187-209 aa
PF17177PPR_long196-228 aa
PF20431E_motif200-228 aa
PF19189Mtf2211-266 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G626810PF21109Stonustoxin_helical6392.19.3
TkA01G626810PF17177PPR_long551182e-1764.0
TkA01G626810PF29070MSC6_N611244.5e-0936.6
TkA01G626810PF21109Stonustoxin_helical1231602.19.3
TkA01G626810PF21109Stonustoxin_helical1872092.19.3
TkA01G626810PF17177PPR_long1962282e-1764.0
TkA01G626810PF20431E_motif2002283.78.6
TkA01G626810PF19189Mtf22112660.1812.2
TkA01G626810PF14559TPR_192192451.2e-0526.2
TkA01G626810PF17177PPR_long2363952e-1764.0
TkA01G626810PF13041PPR_22372696.8e-1865.2
TkA01G626810PF01535PPR2382658.3e-2586.0
TkA01G626810PF13812PPR_32382651.2e-1351.6
TkA01G626810PF00255GSHPx2403020.04714.0
TkA01G626810PF29070MSC6_N2423644.5e-0936.6
TkA01G626810PF23276TPR_242432628.8e-1039.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C977Arabidopsis thalianasp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial49.100%Swiss-ProtMedium
Q9XI21Arabidopsis thalianasp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480, mitochondrial52.700%Swiss-ProtHigh
Q9LRP6Arabidopsis thalianasp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590, mitochondrial48.400%Swiss-ProtMedium
Q9SKU6Arabidopsis thalianasp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial27.800%Swiss-ProtLow
Q94B59Arabidopsis thalianasp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial27.000%Swiss-ProtLow

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