TkA01G622710 | RubberDandelionOmics

Gene overview

TkA01G622710

Reference: TK1151 Chr: Chr01 Coordinates: 157177441-157178534 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

543 bp · TkA01G622710|TK1151|cDNA

ATGGCCGGAATGGGCTGTCCAAGCCTGAACTTGCCGGTGGAGAGGGTTTCCGGTCCTTGGCAGCAAGGTTGCGGGAAAAGGGAGCTGTTGCCAGCAAGGCTGCTTCACGACAGCAAGGAGGGCGAGCTGGAGGAGGATTTTGGGATGCTTGGGTGTAAGCCCTATAACACTCCTTTAGAGGGTAACTTTGTACCCAAACGTGACACTGAGTTGATAGGTGAAGAGTTGGTTGAAAATGTTACTGAATTTCAAAAACTTGT...

CDS

Download CDS FASTA

543 bp · TkA01G622710|TK1151|CDS

ATGGCCGGAATGGGCTGTCCAAGCCTGAACTTGCCGGTGGAGAGGGTTTCCGGTCCTTGGCAGCAAGGTTGCGGGAAAAGGGAGCTGTTGCCAGCAAGGCTGCTTCACGACAGCAAGGAGGGCGAGCTGGAGGAGGATTTTGGGATGCTTGGGTGTAAGCCCTATAACACTCCTTTAGAGGGTAACTTTGTACCCAAACGTGACACTGAGTTGATAGGTGAAGAGTTGGTTGAAAATGTTACTGAATTTCAAAAACTTGT...

Protein

Download Protein FASTA

180 aa · TkA01G622710|TK1151|PROTEIN

MAGMGCPSLNLPVERVSGPWQQGCGKRELLPARLLHDSKEGELEEDFGMLGCKPYNTPLEGNFVPKRDTELIGEELVENVTEFQKLVGKLIYLTVTRPDISYAVQVLSQFMHKPYKYHLNIAFRVLWYLKNNPGKGVHIQKADDFELKGYVDGDWAKCLATRKSVTGYLVYLGNSLVSWR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G622710`
TK1151 ID	TkA01G622710
OH-1004 ID	LXL04_016743
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	66.700
Protein coverage (%)	TK1151 77.222 / OH-1004 7.286 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G622710

Location Chr01:157177441-157178534 (+)

Description Similar to RE1: Retrovirus-related Pol polyprotein from transposon RE1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P92519`	Uncharacterized mitochondrial protein AtMg00810.	No verified direct reference in this release
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release
`UniProt: P93290`	Uncharacterized mitochondrial protein AtMg00240.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016743 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.550

Rank 1 · TkA01G622710 · TK1151

Nucleus0.248

Rank 2 · TkA01G622710 · TK1151

Mitochondrion0.113

Rank 3 · TkA01G622710 · TK1151

Peroxisome0.100

Rank 4 · TkA01G622710 · TK1151

Plastid0.060

Rank 5 · TkA01G622710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P92519`	Arabidopsis thaliana	sp\|P92519\|M810_ARATH Uncharacterized mitochondrial protein AtMg00810	37.400%	Swiss-Prot	Medium
`Q94HW2`	Arabidopsis thaliana	sp\|Q94HW2\|POLR1_ARATH Retrovirus-related Pol polyprotein from transposon RE1	41.200%	Swiss-Prot	Medium
`Q9ZT94`	Arabidopsis thaliana	sp\|Q9ZT94\|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2	42.000%	Swiss-Prot	Medium
`P93290`	Arabidopsis thaliana	sp\|P93290\|M240_ARATH Uncharacterized mitochondrial protein AtMg00240	42.900%	Swiss-Prot	Low

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