TkA01G619110 | RubberDandelionOmics

Gene overview

TkA01G619110

Reference: TK1151 Chr: Chr01 Coordinates: 156233399-156237967 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1815 bp · TkA01G619110|TK1151|cDNA

CCATAATCGCCTCTGCTATTCAGAATAAAACCACGCATACCATGCGTCTGAAACCTTAGGTATCACCACCACCACCTTCGATCATCAATGGCGGGTTTTTATTCATCTATCAGACCCAGCCCATCTTCATCCTCATTATCGCAATCTTCTCAGGCTTTCACTTCCAGAATCTTACTCTTACTCACACTCCTCCCGCTCTCTCTAGCAGCATTCGCATTCGTCCTCCAATGGCGTGGCGAAATCAGTGACCCGACAATACG...

CDS

Download CDS FASTA

873 bp · TkA01G619110|TK1151|CDS

ATGGCGGGTTTTTATTCATCTATCAGACCCAGCCCATCTTCATCCTCATTATCGCAATCTTCTCAGGCTTTCACTTCCAGAATCTTACTCTTACTCACACTCCTCCCGCTCTCTCTAGCAGCATTCGCATTCGTCCTCCAATGGCGTGGCGAAATCAGTGACCCGACAATACGGTGGTCGCCTATAAATCGACTTGATTTTCCGGGTATGGATTCTACCACCTCCTCCAAAGTCCCCACACACAGTTCCTCCAGTTGCGC...

Protein

Download Protein FASTA

290 aa · TkA01G619110|TK1151|PROTEIN

MAGFYSSIRPSPSSSSLSQSSQAFTSRILLLLTLLPLSLAAFAFVLQWRGEISDPTIRWSPINRLDFPGMDSTTSSKVPTHSSSSCADILGQSRSIAFPYFRDWKFNYESDLKPKICITSSTSAGLEQILPWIFYHKVIGVTNFFLFVEGKSASPGVSEVLESIPNVKLIHRTKELEEEQAKSRIWNETWLSSFFYKPCNYELFVKQALNMEMAISMAREADMDWILHLDTDELIHPAGTREYSIRQLLSGLPENIDTVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G619110`
TK1151 ID	TkA01G619110
OH-1004 ID	LXL04_000337
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 98.276 / OH-1004 53.672 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G619110

Location Chr01:156233399-156237967 (+)

Description Similar to ELD1: Glycosyltransferase-like KOBITO 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g57200`	Involved in the coordination between cell elongation and cellulose synthesis by promoting the expression of genes involved in cell elongation and cellulose synthesis.	No verified direct reference in this release
`At3g08550`	Involved in the coordination between cell elongation and cellulose synthesis by promoting the expression of genes involved in cell elongation and cellulose synthesis.	The role of the Arabidopsis ELD1 gene in cell development and photomorphogenesis in darkness.2000 · DOI: 10.1104/pp.123.2.509 KOBITO1 encodes a novel plasma membrane protein necessary for normal synthesis of cellulose during cell expansion in Arabidopsis.2002 · DOI: 10.1105/tpc.002873 The Arabidopsis thaliana ABSCISIC ACID-INSENSITIVE8 encodes a novel protein mediating abscisic acid and sugar responses essential for growth.2004 · DOI: 10.1105/tpc.018077 The elongation defective1 mutant of Arabidopsis is impaired in the gene encoding a serine-rich secreted protein.2003 · DOI: 10.1023/b:plan.0000019067.05185.d6 Regulation of plasmodesmatal permeability and stomatal patterning by the glycosyltransferase-like protein KOBITO1.2012 · DOI: 10.1104/pp.112.194563 Glycosyltransferase-like protein ABI8/ELD1/KOB1 promotes Arabidopsis hypocotyl elongation through regulating cellulose biosynthesis.2015 · DOI: 10.1111/pce.12395
`At2g41451`	Involved in the coordination between cell elongation and cellulose synthesis by promoting the expression of genes involved in cell elongation and cellulose synthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000337 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009416 response to light stimulus Biological Process

GO:0009663 plasmodesma organization Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009749 response to glucose Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009831 plant-type cell wall modification involved in multidimensional cell growth Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010215 cellulose microfibril organization Biological Process

GO:0030154 cell differentiation Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0051301 cell division Biological Process

KEGG gene cross-reference

ath:AT2G41451

ath:AT3G08550

ath:AT3G57200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.645

Rank 1 · TkA01G619110 · TK1151

Endoplasmic reticulum0.121

Rank 2 · TkA01G619110 · TK1151

Cell membrane0.086

Rank 3 · TkA01G619110 · TK1151

Extracellular0.062

Rank 4 · TkA01G619110 · TK1151

Cytoplasm0.060

Rank 5 · TkA01G619110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20677Herpes_gp350_C92-130 aa

PF01697Glyco_transf_92123-265 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G619110	`PF20677`	Herpes_gp350_C	92	130	0.13	13.3
TkA01G619110	`PF01697`	Glyco_transf_92	123	265	2e-05	25.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5XV99`	Arabidopsis thaliana	sp\|Q5XV99\|GLYT7_ARATH Glycosyltransferase-like At3g57200	72.000%	Swiss-Prot	High
`Q9C9Z9`	Arabidopsis thaliana	sp\|Q9C9Z9\|ELD1_ARATH Glycosyltransferase-like KOBITO 1	68.600%	Swiss-Prot	High
`B3H5R0`	Arabidopsis thaliana	sp\|B3H5R0\|GLYT8_ARATH Glycosyltransferase-like At2g41451	69.500%	Swiss-Prot	High

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