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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G617430
Reference: TK1151 Chr: Chr01 Coordinates: 155797931-155802182 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2047 bp · TkA01G617430|TK1151|cDNA

AGGAAATATAAAACTAGTGCTTGGTTGGTCTCCTTCCGGATAGAGCCCTGCACAAATACGATTCCCCAAAACTCATTTCTTATTTGGGTTGGGTTGAGCTGATTTAGGATATTGTATGGTCCGAAACCAATGGCTACAACTGCTCAGATTGCCAACGGCGTCGGAATCGGAATCACTATCGGAAACAATGCTATTAGCCGACGAGCTTCCTCGGCTGCTCCGTCCAGTCCTTCTATAGCTTCCAACAGCATCTTACTCGG...

CDS

Download CDS FASTA

870 bp · TkA01G617430|TK1151|CDS

ATGGCTACAACTGCTCAGATTGCCAACGGCGTCGGAATCGGAATCACTATCGGAAACAATGCTATTAGCCGACGAGCTTCCTCGGCTGCTCCGTCCAGTCCTTCTATAGCTTCCAACAGCATCTTACTCGGCTTCACTCGTCGACGCCCCACTACTCTTCGTTTCGACTCTATCGGTGGTCGATTCTGCAGTCACCGTCGTTCGCCGCTGCCGTGTTCTTTGCGAGTTTCAGCTTCCGCCGCGGACCAACCTACCTCGTC...

Protein

Download Protein FASTA

289 aa · TkA01G617430|TK1151|PROTEIN

MATTAQIANGVGIGITIGNNAISRRASSAAPSSPSIASNSILLGFTRRRPTTLRFDSIGGRFCSHRRSPLPCSLRVSASAADQPTSSGQGVENLVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVNNSPFTVQSSDRKVKCHSIIVATGATARRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G617430
TK1151 IDTkA01G617430
OH-1004 IDLXL04_000361
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.600
Protein coverage (%)TK1151 97.924 / OH-1004 51.455
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G617430
LocationChr01:155797931-155802182 (+)
DescriptionSimilar to NTRC: NADPH-dependent thioredoxin reductase 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41680 Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities.
NADPH-dependent thioredoxin reductase and 2-Cys peroxiredoxins are needed for the protection of Mg-protoporphyrin monomethyl ester cyclase.2008 · DOI: 10.1016/j.febslet.2008.07.006
NTRC links built-in thioredoxin to light and sucrose in regulating starch synthesis in chloroplasts and amyloplasts.2009 · DOI: 10.1073/pnas.0903559106

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0657900 Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000361 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006909 phagocytosis Biological Process
GO:0010380 regulation of chlorophyll biosynthetic process Biological Process
GO:0010581 regulation of starch biosynthetic process Biological Process
GO:0019430 removal of superoxide radicals Biological Process
GO:0042744 hydrogen peroxide catabolic process Biological Process
GO:0043085 positive regulation of catalytic activity Biological Process
GO:0045454 cell redox homeostasis Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0004791 thioredoxin-disulfide reductase (NADPH) activity Molecular Function
KEGG gene cross-reference
ath:AT2G41680
cpa:CP_0444
cpj:trxB
cpn:CPn_0314
cpt:CpB0322
ddi:DDB_G0280815
dosa:Os07g0657900
ncr:NCU08352
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.965
Rank 1 · TkA01G617430 · TK1151
Mitochondrion0.060
Rank 2 · TkA01G617430 · TK1151
Cytoplasm0.017
Rank 3 · TkA01G617430 · TK1151
Nucleus0.017
Rank 4 · TkA01G617430 · TK1151
Cell membrane0.009
Rank 5 · TkA01G617430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13450NAD_binding_857-69 aa
PF07992Pyr_redox_293-283 aa
PF03486HI0933_like93-123 aa
PF01946Thi493-132 aa
PF00070Pyr_redox94-121 aa
PF01266DAO94-128 aa
PF12831FAD_oxidored94-160 aa
PF00890FAD_binding_294-125 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G617430PF13450NAD_binding_857690.000222.3
TkA01G617430PF07992Pyr_redox_2932835.8e-30105.4
TkA01G617430PF03486HI0933_like931236.6e-0729.8
TkA01G617430PF01946Thi4931320.0009819.1
TkA01G617430PF00070Pyr_redox941211.7e-1145.2
TkA01G617430PF01266DAO941289.5e-0832.7
TkA01G617430PF12831FAD_oxidored941602e-0524.8
TkA01G617430PF00890FAD_binding_2941250.0001322.0
TkA01G617430PF01134GIDA941200.0001721.5
TkA01G617430PF04820Trp_halogenase941140.2111.1
TkA01G617430PF05834Lycopene_cycl941170.2711.0
TkA01G617430PF13738Pyr_redox_3951262.5e-1557.2
TkA01G617430PF13450NAD_binding_8961220.000222.3
TkA01G617430PF03486HI0933_like1452056.6e-0729.8
TkA01G617430PF01266DAO1522099.5e-0832.7
TkA01G617430PF05834Lycopene_cycl1542070.2711.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22229Arabidopsis thalianasp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 385.000%Swiss-ProtHigh
Q70G58Oryza sativa subsp. japonicasp|Q70G58|NTRC_ORYSJ Thioredoxin reductase NTRC85.900%Swiss-ProtHigh

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