TkA01G616890 | RubberDandelionOmics

Gene overview

TkA01G616890

Reference: TK1151 Chr: Chr01 Coordinates: 155645180-155646528 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

324 bp · TkA01G616890|TK1151|cDNA

ATGAGAGGCGGCGGGCAACAAAAATGGACGACGGTCCAACGGAAGAAAAGGAGACCTCCGGCGAACATATTCTCAGAGGCTACATCCTTCTATGTAGCTGGGATGTCAAATGGGGCAATGAAATCAGACATTCGTAGGTGCTTTGAAGGCTTTGGAGAACTGGTCGACGTCTTCATGGGGAAAAAGAAGGACACTGCGGGAAACAACTTTGCTTTTGTAAAGTTCCTAAACGTTGAGAACACCGGGGAGATTGATGTTTC...

CDS

Download CDS FASTA

324 bp · TkA01G616890|TK1151|CDS

ATGAGAGGCGGCGGGCAACAAAAATGGACGACGGTCCAACGGAAGAAAAGGAGACCTCCGGCGAACATATTCTCAGAGGCTACATCCTTCTATGTAGCTGGGATGTCAAATGGGGCAATGAAATCAGACATTCGTAGGTGCTTTGAAGGCTTTGGAGAACTGGTCGACGTCTTCATGGGGAAAAAGAAGGACACTGCGGGAAACAACTTTGCTTTTGTAAAGTTCCTAAACGTTGAGAACACCGGGGAGATTGATGTTTC...

Protein

Download Protein FASTA

107 aa · TkA01G616890|TK1151|PROTEIN

MRGGGQQKWTTVQRKKRRPPANIFSEATSFYVAGMSNGAMKSDIRRCFEGFGELVDVFMGKKKDTAGNNFAFVKFLNVENTGEIDVSPVFGVEVFRFDKGLHYFSLE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G616890`
TK1151 ID	TkA01G616890
OH-1004 ID	LXL04_032542
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	79.500
Protein coverage (%)	TK1151 77.570 / OH-1004 46.111 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G616890`
Location	Chr01:155645180-155646528 (+)
Description	Similar to SRSF8: Serine/arginine-rich splicing factor 8
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032542` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0033197 response to vitamin E Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005726 perichromatin fibrils Cellular Component GO:0005829 cytosol Cellular Component GO:0016607 nuclear speck Cellular Component GO:0035061 interchromatin granule Cellular Component GO:0003714 transcription corepressor activity Molecular Function
KEGG gene cross-reference	gga:396195 hsa:6427 mmu:20382 ptr:619467 rno:494445 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.456

Rank 1 · TkA01G616890 · TK1151

Nucleus0.393

Rank 2 · TkA01G616890 · TK1151

Mitochondrion0.106

Rank 3 · TkA01G616890 · TK1151

Plastid0.067

Rank 4 · TkA01G616890 · TK1151

Cell membrane0.048

Rank 5 · TkA01G616890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076RRM_131-80 aa

PF28186T4SS_Ceg1035-72 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G616890	`PF00076`	RRM_1	31	80	4.1e-05	24.1
TkA01G616890	`PF28186`	T4SS_Ceg10	35	72	0.17	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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