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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G615220
Reference: TK1151 Chr: Chr01 Coordinates: 155177683-155181570 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2813 bp · TkA01G615220|TK1151|cDNA

ATTTATCTCAGTTGAGGAAGAGGCGAAGAGAGAGAGAGAGCATAGGAAATGGCGAAGATGCAAGAAGAAGCTCTTCTGTTCTGATTATCCCATAAGAAATCGCTAGTTTTGATTCTCTCATCAGTCTTTCACTGTCTTCGATTCTTAGATCTGAAAACCCCTTAAAACCTTCGATGATTAAGTAAAGCAAAATCTGCGATAAAAATATGAGCCAATTGAGTATCGAAACTGGAGATTCTTTTGCTACTTTACTCGAACTT...

CDS

Download CDS FASTA

1971 bp · TkA01G615220|TK1151|CDS

ATGAGCCAATTGAGTATCGAAACTGGAGATTCTTTTGCTACTTTACTCGAACTTGCTGCAAATAATGACATCGAGGGGTTCACCCAATCAATCGAGTCCGACTCATCTGGGATTGACGAGGTCGGATTATGGTATGGCCGTCAAAAGGGGTCAAAACAAATGGTTCTCGAACACCGAACTCCATTAATGGTGGCCGCCATGTATGGAAGCATCGACGTTCTGAAGCTAATTCTTTCCCAATCAAAAGTCGATGTGAACAG...

Protein

Download Protein FASTA

656 aa · TkA01G615220|TK1151|PROTEIN

MSQLSIETGDSFATLLELAANNDIEGFTQSIESDSSGIDEVGLWYGRQKGSKQMVLEHRTPLMVAAMYGSIDVLKLILSQSKVDVNRLCGVDKTTALHCAASGGSINAVEAIKLLLLNGADPNLIDVNGLRPVDMIVVSPKLPDMKKTLEELLGADGDLELPILNSLSPENHSPENRSPVSDPDLLSSPKISPFDTKREYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G615220
TK1151 IDTkA01G615220
OH-1004 IDLXL04_000385
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 97.619
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G615220
LocationChr01:155177683-155181570 (-)
DescriptionSimilar to At2g41900: Zinc finger CCCH domain-containing protein 30
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41900 Zinc finger CCCH domain-containing protein 30. No verified direct reference in this release
At5g12850 Zinc finger CCCH domain-containing protein 56. No verified direct reference in this release
At5g58620 Zinc finger CCCH domain-containing protein 66. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0698800 Zinc finger CCCH domain-containing protein 24. No verified direct reference in this release
Os07g0568300 Zinc finger CCCH domain-containing protein 50. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000385 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006412 translation Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0080090 regulation of primary metabolic process Biological Process
GO:1902074 response to salt Biological Process
GO:0000932 P-body Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT2G41900
ath:AT5G12850
ath:AT5G58620
dosa:Os03g0698800
dosa:Os12g0515500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.685
Rank 1 · TkA01G615220 · TK1151
Nucleus0.338
Rank 2 · TkA01G615220 · TK1151
Cell membrane0.065
Rank 3 · TkA01G615220 · TK1151
Lysosome / Vacuole0.041
Rank 4 · TkA01G615220 · TK1151
Mitochondrion0.037
Rank 5 · TkA01G615220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16131Torus33-53 aa
PF12796Ank_254-126 aa
PF24521Ank_KRIT154-95 aa
PF13606Ank_358-86 aa
PF00023Ank59-86 aa
PF13857Ank_560-82 aa
PF13637Ank_462-110 aa
PF13857Ank_585-135 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G615220PF16131Torus33530.1113.8
TkA01G615220PF12796Ank_2541265.1e-1143.7
TkA01G615220PF24521Ank_KRIT154950.01216.0
TkA01G615220PF13606Ank_358869.2e-1038.5
TkA01G615220PF00023Ank59863.2e-1349.8
TkA01G615220PF13857Ank_560822.8e-0628.3
TkA01G615220PF13637Ank_4621101.2e-1042.0
TkA01G615220PF13857Ank_5851352.8e-0628.3
TkA01G615220PF24521Ank_KRIT1911230.01216.0
TkA01G615220PF00023Ank941263.2e-1349.8
TkA01G615220PF13606Ank_3951239.2e-1038.5
TkA01G615220PF13637Ank_41091341.2e-1042.0
TkA01G615220PF25512zf-CCCH_AtC3H232182514.1e-2278.3
TkA01G615220PF00642zf-CCCH2392451.6e-0525.4
TkA01G615220PF18345zf_CCCH_42392443.7e-0524.3
TkA01G615220PF14608zf-CCCH_22392457.18.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93755Arabidopsis thalianasp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 3056.200%Swiss-ProtHigh
Q9LXV4Arabidopsis thalianasp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 5647.200%Swiss-ProtMedium
Q9LUZ4Arabidopsis thalianasp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 6642.700%Swiss-ProtMedium
Q10EL1Oryza sativa subsp. japonicasp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 2452.900%Swiss-ProtHigh
Q84SL2Oryza sativa subsp. japonicasp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 5042.600%Swiss-ProtMedium

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